View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11992_high_27 (Length: 269)

Name: NF11992_high_27
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11992_high_27
NF11992_high_27
[»] chr4 (1 HSPs)
chr4 (18-269)||(20020216-20020467)
[»] scaffold0200 (1 HSPs)
scaffold0200 (195-237)||(1252-1294)
[»] chr8 (2 HSPs)
chr8 (199-237)||(31144857-31144895)
chr8 (199-246)||(19727418-19727465)
[»] chr5 (10 HSPs)
chr5 (199-237)||(23754494-23754532)
chr5 (199-237)||(23774528-23774566)
chr5 (199-237)||(23819949-23819987)
chr5 (199-237)||(23861481-23861519)
chr5 (195-237)||(41973944-41973986)
chr5 (199-237)||(23691515-23691553)
chr5 (200-229)||(20292560-20292589)
chr5 (200-229)||(20301008-20301037)
chr5 (200-229)||(20305421-20305450)
chr5 (200-229)||(20309825-20309854)
[»] chr3 (19 HSPs)
chr3 (195-237)||(1898132-1898174)
chr3 (195-237)||(1907578-1907620)
chr3 (199-237)||(1941034-1941072)
chr3 (198-246)||(12132618-12132666)
chr3 (199-237)||(1891525-1891563)
chr3 (195-237)||(2697205-2697247)
chr3 (199-237)||(2931470-2931508)
chr3 (199-236)||(1937439-1937476)
chr3 (201-237)||(1004034-1004070)
chr3 (201-237)||(1022031-1022067)
chr3 (193-244)||(988939-988990)
chr3 (198-241)||(13479162-13479205)
chr3 (192-246)||(955920-955974)
chr3 (199-237)||(968233-968271)
chr3 (198-236)||(2458936-2458974)
chr3 (200-229)||(13497789-13497818)
chr3 (199-235)||(1931617-1931653)
chr3 (198-250)||(9496898-9496950)
chr3 (200-228)||(13526170-13526198)
[»] chr7 (1 HSPs)
chr7 (198-246)||(1078657-1078705)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 20020467 - 20020216
Alignment:
Q  18 gacgaagtaaattccttctcaagtcatatacactccactccgttttcaccgacgacgtaaccaccgacgtcatgcatctcagctttccttccaccagttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20020467 gacgaagtaaattccttctcaagtcatatacactccactccgttttcaccgacgacgtaaccaccgacgtcatgcatctcagctttccttccaccagttt 20020368  T
Q  118 ttatctaccttccattgttgcctcttgcaacggtatcctttgtattgccgactttaaccaaacttcttctattcatgttctattgtggaacccttccatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  20020367 ttatctaccttccattgttgcctcttgcaacggtatcctttgtattgccgacttataccaaacttcttctattcatgttctattgtggaacccttccatt 20020268  T
Q  218 agaaaattcaaggaattgccacttcttgagaaggcaatcggtcacgttatta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20020267 agaaaattcaaggaattgccacttcttgagaaggcaatcggtcacgttatta 20020216  T

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Target: scaffold0200 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 1294 - 1252
Alignment:
Q  195 ttctattgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  1294 ttctattgtggaacccttccactagaaaattcaaggaattgcc 1252  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 31144895 - 31144857
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31144895 attgtggaacccttccattagaaaattcaaggaattgcc 31144857  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 19727418 - 19727465
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgccacttcttga 246  Q
    |||||||||||||||| |||||||||||||||| ||||| | ||||||    
T  19727418 attgtggaacccttccgttagaaaattcaaggacttgccccctcttga 19727465  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 23754532 - 23754494
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23754532 attgtggaacccttccattagaaaattcaaggaattgcc 23754494  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 23774566 - 23774528
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23774566 attgtggaacccttccattagaaaattcaaggaattgcc 23774528  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 23819987 - 23819949
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23819987 attgtggaacccttccattagaaaattcaaggaattgcc 23819949  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 23861519 - 23861481
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23861519 attgtggaacccttccattagaaaattcaaggaattgcc 23861481  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 41973986 - 41973944
Alignment:
Q  195 ttctattgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  41973986 ttctattgtggaacccttccactagaaaattcaaggaattgcc 41973944  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 23691515 - 23691553
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  23691515 attgtggaacccttccattagaaaattcattgaattgcc 23691553  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 20292560 - 20292589
Alignment:
Q  200 ttgtggaacccttccattagaaaattcaag 229  Q
    ||||||||||||||||||||||||||||||    
T  20292560 ttgtggaacccttccattagaaaattcaag 20292589  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 20301008 - 20301037
Alignment:
Q  200 ttgtggaacccttccattagaaaattcaag 229  Q
    ||||||||||||||||||||||||||||||    
T  20301008 ttgtggaacccttccattagaaaattcaag 20301037  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 20305421 - 20305450
Alignment:
Q  200 ttgtggaacccttccattagaaaattcaag 229  Q
    ||||||||||||||||||||||||||||||    
T  20305421 ttgtggaacccttccattagaaaattcaag 20305450  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 20309825 - 20309854
Alignment:
Q  200 ttgtggaacccttccattagaaaattcaag 229  Q
    ||||||||||||||||||||||||||||||    
T  20309825 ttgtggaacccttccattagaaaattcaag 20309854  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 1898174 - 1898132
Alignment:
Q  195 ttctattgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  1898174 ttctattgtggaacccttccattcgaaaattcaaggaattgcc 1898132  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 1907620 - 1907578
Alignment:
Q  195 ttctattgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  1907620 ttctattgtggaacccttccattcgaaaattcaaggaattgcc 1907578  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 1941072 - 1941034
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1941072 attgtggaacccttccattagaaaattcaaggaattgcc 1941034  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 12132618 - 12132666
Alignment:
Q  198 tattgtggaacccttccattagaaaattcaaggaattgccacttcttga 246  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  12132618 tattgttgaacccttccattagaaaattcaaggagttgccccttcttga 12132666  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 1891563 - 1891525
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  1891563 attgtggaacccttccattagaaaatttaaggaattgcc 1891525  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 2697247 - 2697205
Alignment:
Q  195 ttctattgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  2697247 ttctattgtggaacccttcaattagaaaatttaaggaattgcc 2697205  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 2931470 - 2931508
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2931470 attgtggaacccttccattcgaaaattcaaggaattgcc 2931508  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 1937476 - 1937439
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgc 236  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  1937476 attgtggaatccttccattagaaaattcaaggaattgc 1937439  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 1004034 - 1004070
Alignment:
Q  201 tgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1004034 tgtggaacccttccattagaaaattaaaggaattgcc 1004070  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 1022031 - 1022067
Alignment:
Q  201 tgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1022031 tgtggaacccttccattagaaaattaaaggaattgcc 1022067  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 988939 - 988990
Alignment:
Q  193 tgttctattgtggaacccttccattagaaaattcaaggaattgccacttctt 244  Q
    ||||| |||||||||||||||||||||||||   ||||||||||| ||||||    
T  988939 tgttcgattgtggaacccttccattagaaaagataaggaattgccccttctt 988990  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 13479162 - 13479205
Alignment:
Q  198 tattgtggaacccttccattagaaaattcaaggaattgccactt 241  Q
    |||||||||||||||||||||  |||||||||||||| ||||||    
T  13479162 tattgtggaacccttccattaataaattcaaggaattaccactt 13479205  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 955920 - 955974
Alignment:
Q  192 atgttctattgtggaacccttccattagaaaattcaaggaattgccacttcttga 246  Q
    |||||| |||||| |||||||| ||||||||||||||||| ||||| | ||||||    
T  955920 atgttcgattgtgtaacccttctattagaaaattcaaggatttgccccctcttga 955974  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 968233 - 968271
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattgcc 237  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  968233 attgtggaatccttccattagaaaattcaaagaattgcc 968271  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 2458936 - 2458974
Alignment:
Q  198 tattgtggaacccttccattagaaaattcaaggaattgc 236  Q
    |||||||||| || |||||||||||||||||||||||||    
T  2458936 tattgtggaatccatccattagaaaattcaaggaattgc 2458974  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 13497789 - 13497818
Alignment:
Q  200 ttgtggaacccttccattagaaaattcaag 229  Q
    ||||||||||||||||||||||||||||||    
T  13497789 ttgtggaacccttccattagaaaattcaag 13497818  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 1931653 - 1931617
Alignment:
Q  199 attgtggaacccttccattagaaaattcaaggaattg 235  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  1931653 attgtggaatccttccattcgaaaattcaaggaattg 1931617  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 9496950 - 9496898
Alignment:
Q  198 tattgtggaacccttccattagaaaattcaaggaattgccacttcttgagaag 250  Q
    ||||||||||||||||| | |||||||| || || ||||||||| ||||||||    
T  9496950 tattgtggaacccttccgtaagaaaatttaaagagttgccactttttgagaag 9496898  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 13526170 - 13526198
Alignment:
Q  200 ttgtggaacccttccattagaaaattcaa 228  Q
    |||||||||||||||||||||||||||||    
T  13526170 ttgtggaacccttccattagaaaattcaa 13526198  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 1078705 - 1078657
Alignment:
Q  198 tattgtggaacccttccattagaaaattcaaggaattgccacttcttga 246  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  1078705 tattgttgaacccttccattagaaaattcaaggagttgccccttcttga 1078657  T

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