View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_high_28 (Length: 268)
Name: NF11992_high_28
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 50 - 253
Target Start/End: Complemental strand, 41980588 - 41980385
Alignment:
| Q |
50 |
atatggtgtggctgcatttcgcggagattgattcgagtgtgaaaaaagaaggagagagagtttttgatgtgtttatcaatggaaacaatgtaacaagagt |
149 |
Q |
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| T |
41980588 |
atatggtgtggctgcatttcgcggagattgattcgagtgtgaaaaaagaaggagagagagtttttgatgtgtttatcaatggaaacaatgtaacaagagt |
41980489 |
T |
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| Q |
150 |
cgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactgtgaaaaatttgagtagtaatgttttggggattaagcttgttactgtc |
249 |
Q |
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| T |
41980488 |
tgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactgtgaaaaatttgagtagtaatgttttggggattaagcttgttactgtt |
41980389 |
T |
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| Q |
250 |
tctg |
253 |
Q |
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|||| |
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| T |
41980388 |
tctg |
41980385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 22084350 - 22084465
Alignment:
| Q |
103 |
gagagagtttttgatgtgtttatcaatggaaacaatgtaacaagagtcgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactg |
202 |
Q |
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| T |
22084350 |
gagagggtgtttgatgtgttcatcaatggtgataatttgactagagtagatatttacaaacaagttgggggtttagctgcgtttacttggcatcatacag |
22084449 |
T |
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| Q |
203 |
tgaaaaatttgagtag |
218 |
Q |
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| T |
22084450 |
tgaagaatttgagtag |
22084465 |
T |
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