View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_high_32 (Length: 245)
Name: NF11992_high_32
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 39726521 - 39726292
Alignment:
| Q |
1 |
ttttcttatactattggtgcttttagtttgtggggtggtggtttcttgtttcaatggggtgttatggattattctggtggttatgttattcatctttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726521 |
ttttcttatactattggtgcttttagtttgtggggtggtggtttcttgtttcaatggggtgttatggattattctggtggttatgttattcatctttctt |
39726422 |
T |
|
| Q |
101 |
ctgggattgctggtttcactgctgcttattgggtttgttctcttcttcacctctttttctctctaagaatgctcattttaacacgttctttttaatattt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726421 |
ctgggattgctggtttcaccgctgcttattgggtttgttctcttcttcacctctttttctctctaagaatgctcattttaacacgttctttttaatattt |
39726322 |
T |
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| Q |
201 |
actcttttattagatgaaattcaccaactg |
230 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
39726321 |
actcttttattagatgaaattcactaactg |
39726292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 31606189 - 31606235
Alignment:
| Q |
88 |
attcatctttcttctgggattgctggtttcactgctgcttattgggt |
134 |
Q |
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|||||||| |||||||| |||| ||||||||||||||||||||||| |
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| T |
31606189 |
attcatctatcttctggtgttgcaggtttcactgctgcttattgggt |
31606235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 25671057 - 25670924
Alignment:
| Q |
1 |
ttttcttatactattggtgcttttagtttgtggggtggtgg-tttcttgtttcaatggggtgttatggattattctggtggttatgttattcatctttct |
99 |
Q |
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|||||||||||| |||||||||||||| | ||||||||||| |||||| | ||| |||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
25671057 |
ttttcttatactgttggtgcttttagtctttggggtggtggatttctt-tatcattggggtgtgattgattattctggtggttatgttattcatctttct |
25670959 |
T |
|
| Q |
100 |
tctgggattgctggtttcactgctgcttattgggt |
134 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
25670958 |
tctggaattgctggtttcactgctgcttattgggt |
25670924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 47501661 - 47501734
Alignment:
| Q |
61 |
gttatggattattctggtggttatgttattcatctttcttctgggattgctggtttcactgctgcttattgggt |
134 |
Q |
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||||| |||| | |||| || ||||||||||| || ||| |||| |||||||||| ||||||||||||||||| |
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|
| T |
47501661 |
gttattgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt |
47501734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 5625265 - 5625135
Alignment:
| Q |
4 |
tcttatactattggtgcttttagtttgtggggtggtggtttcttgtttcaatggggtgttatggattattctggtggttatgttattcatctttcttctg |
103 |
Q |
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||||| ||| |||||||||||||| | ||||||||||| || |||| ||| |||||||| || |||| |||||||| |||||||||||||||||||||| |
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| T |
5625265 |
tcttacactgttggtgcttttagtatatggggtggtggatttttgtatcattggggtgtcattgatttctctggtggctatgttattcatctttcttctg |
5625166 |
T |
|
| Q |
104 |
ggattgctggtttcactgctgcttattgggt |
134 |
Q |
| |
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| |||| ||| |||||||| ||||||||||| |
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| T |
5625165 |
gaattggtggattcactgcagcttattgggt |
5625135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 13349918 - 13349846
Alignment:
| Q |
62 |
ttatggattattctggtggttatgttattcatctttcttctgggattgctggtttcactgctgcttattgggt |
134 |
Q |
| |
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|||| ||||| |||||||||||||| |||||| | ||||||||| ||||||| || ||||||||||||||||| |
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| T |
13349918 |
ttatcgattactctggtggttatgtcattcatttgtcttctggggttgctgggtttactgctgcttattgggt |
13349846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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