View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_high_4 (Length: 553)
Name: NF11992_high_4
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 54431139 - 54430605
Alignment:
| Q |
1 |
atatggattgtcctccattttttgagaagaagtgtatatggattgtcctcaatgttttgcatatatgaagtgaacaggactaaatggagcaaatatggac |
100 |
Q |
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| T |
54431139 |
atatggattgtcctccattttttgagaagaagtgtatatggattgtcctcaatgttttgcatatatgaagtgaacaggactaaatggagcaaatatggac |
54431040 |
T |
|
| Q |
101 |
tagtggattaacatttgtttagtaacaagttcaagataatcaattgtgtgtttcttgagttgagattccattcatttaccccacatctagattattgttc |
200 |
Q |
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| T |
54431039 |
tagtggattaacatttgtttagtaacaagttcaagataatcaattgtgtgtttcttgagttgagattccattcatttaccccacatctagactattgttc |
54430940 |
T |
|
| Q |
201 |
atttatgagagagatagacacaattagaagattgatgaactccattagtgagaagtgctaattaaagtgaattccattagtttgtattgtttggatgaat |
300 |
Q |
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| T |
54430939 |
atttatgagagagatagacacaattagaagattgatgaactccattagtgagaagtgctaattaaagtgaattcctttagtttgtattgtttggatgaat |
54430840 |
T |
|
| Q |
301 |
agaaaaataagtagagagaaatttataaaaacgattaaaagacaaatatattccttataggagtataactctaaatgaatggtgggtaaatggaggaatc |
400 |
Q |
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| T |
54430839 |
agaaaaataagtagagagaaatttataaaaacgattaaaagacaaatatattccttataggagtataactctaaatgaatggtgagtaaatggaggaatc |
54430740 |
T |
|
| Q |
401 |
caaaatgaattcacatgtatgcataacagaccaacttgcatatatactcaccaaactgcttactgctgcgaaaatcatgaactcacatccaagatcaagg |
500 |
Q |
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| T |
54430739 |
caaaatgaattcatatgtatgcataacagaccaacttgcatatatactcaccaaactgcttactgctgcgaaaatcatgaactcacatccaagatcaagg |
54430640 |
T |
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| Q |
501 |
tcacaaatggtgacttgctcttgagagggcatact |
535 |
Q |
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| T |
54430639 |
tcacaaatggtgacttgctcttgagagggcatact |
54430605 |
T |
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