View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_high_6 (Length: 469)
Name: NF11992_high_6
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 6489244 - 6489636
Alignment:
| Q |
19 |
acgaggcgtgtaggatttggaaaacaaggcattctccgcctatgtagagttgaacggacagcagctgggg-ggacacactgctgcggttgatgaagagac |
117 |
Q |
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| T |
6489244 |
acgaggcatgtaggatttggaaaacaaggcattcttcggctatgtagagttgaacggacatcagctgggggggacacaccgatgcggttgatgaagagac |
6489343 |
T |
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| Q |
118 |
actcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgt |
217 |
Q |
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| T |
6489344 |
actcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtctatttgtgatcattgt |
6489443 |
T |
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| Q |
218 |
gtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttagggagaacataatcgattgtgctgatggacatcgtggattttcaaaga |
317 |
Q |
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| T |
6489444 |
gtgaatgatgtctgagtgaaagaagacatcgtac---ttgtgagttttgttagggagagcataaccgattgtggtgatggacaacgtggattttcaaaga |
6489540 |
T |
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| Q |
318 |
atattagtgaattcttaaaagctaagtgatgtatnnnnnnnnntaggctagtcaaatatatagaaggtgaattcattcataaaggctgccgatacat |
414 |
Q |
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| T |
6489541 |
atattattgaattcttgaaagc-aagtgatgtataaaaaaaaataggctagtcaaatatataaaaggtgaattcattcataaaggctgccgatacat |
6489636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 65 - 410
Target Start/End: Complemental strand, 6480265 - 6479921
Alignment:
| Q |
65 |
gagttgaacggacagcagctg-gggggacacactgctgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtaggg |
163 |
Q |
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| T |
6480265 |
gagttgaacggacagcaactgcgggggacacaccactgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtaggg |
6480166 |
T |
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| Q |
164 |
tttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagtt |
263 |
Q |
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| T |
6480165 |
tttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtggttt |
6480066 |
T |
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| Q |
264 |
ttgttagggagaacataatcgattgtgctgatggacatcgtggattttcaaagaatattagtgaattcttaaaagctaagtgatgtatnnnnnnnnntag |
363 |
Q |
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| T |
6480065 |
ttgttagggagagcgtaatcgattgtggtgatggacattgtggattttcaaagaatattattgaattcttgaaagctaagtgatgtat--aaaaaaatag |
6479968 |
T |
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| Q |
364 |
gctagtcaaatatatagaaggtgaattcattcataaaggctgccgat |
410 |
Q |
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| T |
6479967 |
ggtagttaaatatatagaagatgaattcattcataaaggctgccgat |
6479921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 415 - 459
Target Start/End: Original strand, 6489658 - 6489702
Alignment:
| Q |
415 |
aaacagaaccatgaccaaatatataacctttccactaaccctttg |
459 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6489658 |
aaagagaaccatgaccaaatatataacctttccactaaccctttg |
6489702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 51947046 - 51946714
Alignment:
| Q |
19 |
acgaggcgtgtaggatttggaaaacaaggcattctccgcctatgtagagttgaacggacagcagctggggg-gacacactgctgcggttgatgaagagac |
117 |
Q |
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| T |
51947046 |
acgaggcgtgtaggatttggaaaacaaggcattctccgcctatgtatagttgaa-ggacagcagctgggggagacacaccagagtggttgatgaagagac |
51946948 |
T |
|
| Q |
118 |
actcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgt |
217 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51946947 |
actcaacatctaagccgacaaggaagctattgttgttttcgtatggtttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgt |
51946848 |
T |
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| Q |
218 |
gtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttagggagaacataatcgattgtgctgatggacatcgtggattttcaaaga |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | | |||||||||||| ||||||||||||||||||||||| || |
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| T |
51946847 |
gtgaatgatgtctgagtggaagaagacatcgtgcttgttgtgagttttattagggacagcgtaatcgattgtggtgatggacatcgtggattttcaatga |
51946748 |
T |
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| Q |
318 |
atattagtgaattcttaaaagctaagtgatgtat |
351 |
Q |
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| T |
51946747 |
atattattgaattcttgagagctaagtgatgtat |
51946714 |
T |
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