View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11992_low_10 (Length: 440)

Name: NF11992_low_10
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11992_low_10
NF11992_low_10
[»] chr6 (12 HSPs)
chr6 (17-357)||(4613871-4614211)
chr6 (112-340)||(4563413-4563653)
chr6 (366-423)||(4613784-4613841)
chr6 (367-423)||(4592241-4592297)
chr6 (209-260)||(4592067-4592118)
chr6 (285-340)||(4592118-4592173)
chr6 (367-422)||(4516331-4516386)
chr6 (373-416)||(4563727-4563770)
chr6 (367-423)||(4560516-4560572)
chr6 (379-413)||(4492977-4493011)
chr6 (129-163)||(4585327-4585361)
chr6 (373-422)||(4480709-4480758)
[»] chr8 (2 HSPs)
chr8 (382-422)||(1674251-1674291)
chr8 (367-414)||(20863918-20863965)
[»] chr5 (1 HSPs)
chr5 (382-422)||(28000166-28000206)


Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 4614211 - 4613871
Alignment:
Q  17 tattaaactcaacaaattacttgtccttaacaaaactataagtattatgtgctattggagaatgttgatttgaactggaatacataggaaaaattatttt 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4614211 tattaatctcaacaaattacttgtccttaacaaaactataagtattatgtgctattggagaatgttgatttgaactggaatacataggaaaaattatttt 4614112  T
Q  117 ttgacaaaatgaatccttcaaatgataatggaattcaagatactgtgaaaggactcttacttcccccaacttaacaaatttaaagatgtagggttaatat 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4614111 ttgacaaaatgaatcattcaaatgataatggaattcaagatactgtgaaaggactcttacttcccccaacttaacaaatttaaagatgtagggttaatat 4614012  T
Q  217 acatgctatataattatccaatgtgcatatattcaaaccattcaagataagcaagaatcgttattttaagtttacgatctcttgctgaagatcagttcat 316  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4614011 acctgctatataattatccaatgtgcatatattcaaaccattcaagataagcaagaatcgttattttaagtttaccatctcttgctgaagatcagttcat 4613912  T
Q  317 ttacatcatcacttaaattcaataagaaactctttgcataa 357  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4613911 ttacatcatcacttaaattcaataagaaactctttgcataa 4613871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 340
Target Start/End: Original strand, 4563413 - 4563653
Alignment:
Q  112 attttttgacaaaatgaatccttcaaatgataatggaattcaagatactgtgaaaggactcttacttcccccaacttaacaaatttaaagatgtagg--- 208  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||| ||| |||||||||||| |||||||  ||||||       
T  4563413 attttttgacaaaatggatccttcacatgataatggaattcaagatactgtgaaagaattctta-ttcacccaacttaacatatttaaacttgtaggatt 4563511  T
Q  209 -----------gttaatatacatgctatataattatccaatgtgcatatattcaaaccattcaagataagcaagaatcgttattttaagtttacgatctc 297  Q
               |||||||||||||| ||||||||||||||| |||||||||||||| || | || || ||||||||||  || |||||||| | || |||    
T  4563512 tatattataaagttaatatacatgccatataattatccaatatgcatatattcaaaacacttaaaattagcaagaatcacta-tttaagttcaggaactc 4563610  T
Q  298 ttgctgaagatcagttcatttacatcatcacttaaattcaata 340  Q
    ||||||||||| | |||| ||||||||  ||||||||||||||    
T  4563611 ttgctgaagatgacttcacttacatcagaacttaaattcaata 4563653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 4613841 - 4613784
Alignment:
Q  366 cagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctc 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4613841 cagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctc 4613784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 4592241 - 4592297
Alignment:
Q  367 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctc 423  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  4592241 agcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc 4592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 4592067 - 4592118
Alignment:
Q  209 gttaatatacatgctatataattatccaatgtgcatatattcaaaccattca 260  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  4592067 gttaatatacatgccatataattatccaatatgcatatattcaaaacattca 4592118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 4592118 - 4592173
Alignment:
Q  285 agtttacgatctcttgctgaagatcagttcatttacatcatcacttaaattcaata 340  Q
    |||||| || |||||||||||||| |||||| ||||||||||||||||||||||||    
T  4592118 agtttaggaactcttgctgaagatgagttcacttacatcatcacttaaattcaata 4592173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 4516331 - 4516386
Alignment:
Q  367 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtct 422  Q
    ||||||||||| || |||||||| |||||||||| |||||||||||| ||||||||    
T  4516331 agcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtct 4516386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 4563727 - 4563770
Alignment:
Q  373 acctcattgatcactttgtccaagttcatatatgaacaacctcc 416  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||    
T  4563727 acctccttgatcactttgtccaagttcatgtatgaacaacctcc 4563770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 4560516 - 4560572
Alignment:
Q  367 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctc 423  Q
    |||| |||||| || |||||||| ||||||||||| |||||||||||||| ||||||    
T  4560516 agcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctc 4560572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 4492977 - 4493011
Alignment:
Q  379 ttgatcactttgtccaagttcatatatgaacaacc 413  Q
    ||||||||||||||||||||||| |||||||||||    
T  4492977 ttgatcactttgtccaagttcatgtatgaacaacc 4493011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 4585327 - 4585361
Alignment:
Q  129 atccttcaaatgataatggaattcaagatactgtg 163  Q
    |||||||| ||||||||||||||||||||||||||    
T  4585327 atccttcatatgataatggaattcaagatactgtg 4585361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 4480709 - 4480758
Alignment:
Q  373 acctcattgatcactttgtccaagttcatatatgaacaacctcctggtct 422  Q
    ||||| || |||||||||||||||||||| ||||||||||| || |||||    
T  4480709 acctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtct 4480758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 1674251 - 1674291
Alignment:
Q  382 atcactttgtccaagttcatatatgaacaacctcctggtct 422  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  1674251 atcactttgtccaagttcatgtatgaacaaccacctggtct 1674291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 414
Target Start/End: Complemental strand, 20863965 - 20863918
Alignment:
Q  367 agcagcacctcattgatcactttgtccaagttcatatatgaacaacct 414  Q
    |||| |||||| || |||||||||||||||||||||||||||| ||||    
T  20863965 agcaacacctccttaatcactttgtccaagttcatatatgaaccacct 20863918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 28000206 - 28000166
Alignment:
Q  382 atcactttgtccaagttcatatatgaacaacctcctggtct 422  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  28000206 atcactttgtccaagttcatgtatgaacaaccacctggtct 28000166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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