View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_13 (Length: 411)
Name: NF11992_low_13
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 3 - 396
Target Start/End: Original strand, 38342657 - 38343051
Alignment:
| Q |
3 |
gtgcagaagtttatcagtgtgcagcaatgtgactgatttgtgtaatcaaactgtaactttcctttcttaggactacttgtggactgtggtgatgacagga |
102 |
Q |
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| T |
38342657 |
gtgcagaagtttatcagtgtgcagcaatgtgactgatttatgtaatcaaactgtaactttcctttcttaggactacttgtggactgtggtgatgacagga |
38342756 |
T |
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| Q |
103 |
tatttagttattaaatattaatacaatgttttgcttattcagaaggnnnnnnntcaggtatttacatttttctcttcagtatcatcttgcagcaaaa-aa |
201 |
Q |
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| T |
38342757 |
tatttagttattaaatattaatacaatgttttgcttattcagaagaaaaaaaatcaggtatttacatttttctcttcagtatcatcttgcagcaaaaaaa |
38342856 |
T |
|
| Q |
202 |
ttagccaatgtgagactatctgcagaatttgtcaactcttattcatgcattggaatttcagatgttggaacattgtcgcttttgaagcccacgtttaggc |
301 |
Q |
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| T |
38342857 |
ttagccaatgtgggactatctgcagaatttgtcaactcttattcatgcattggaatttcagatgttggaacattgtcgcttttgaagcccacgtttaggc |
38342956 |
T |
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| Q |
302 |
tgatttctagggagttatcaataacttgcaaacttttgttggtgtcaagaaatgaaccttcccggtttttcggcagttcttccattctacctatg |
396 |
Q |
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| T |
38342957 |
tgatttctagggagttatcaataacttgcaaacttttgttggtgtcaagaaatgaaccttcctggtttttcggcagttcttccattctacctatg |
38343051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 382
Target Start/End: Original strand, 38335478 - 38335582
Alignment:
| Q |
278 |
cgcttttgaagcccacgtttaggctgatttctagggagttatcaataacttgcaaacttttgttggtgtcaagaaatgaaccttcccggtttttcggcag |
377 |
Q |
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| T |
38335478 |
cgcttttgaagcccgcgtttaggctaacctctaatgaattatcaataacttccaaactcttgttgctgtcaagaaaagaaccttccccatttgtaggcag |
38335577 |
T |
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| Q |
378 |
ttctt |
382 |
Q |
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||||| |
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| T |
38335578 |
ttctt |
38335582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 38334142 - 38334248
Alignment:
| Q |
161 |
tatttacatttttctcttcagtatcatcttgcagcaaaaaattagccaatgtgagactatctgcagaatttgtcaactcttattcatgcattggaatttc |
260 |
Q |
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||||||| | ||||||| ||| ||| |||||| |||||| | |||||||||| ||||||||| |||||||||||| | ||||||| |||||||||| |
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| T |
38334142 |
tatttacttctttctctccagcatcgtcttgctgcaaaaggtcagccaatgtgggactatctggagaatttgtcaagcc---ttcatgccttggaatttc |
38334238 |
T |
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| Q |
261 |
agatgttgga |
270 |
Q |
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| T |
38334239 |
agatgttgga |
38334248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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