View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_14 (Length: 403)
Name: NF11992_low_14
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 80 - 364
Target Start/End: Original strand, 49863214 - 49863489
Alignment:
| Q |
80 |
aaaattcataaagtaatctacacgaagaaacaagaaaatttctagagtactgccaaaaatcaaagacaaatgagtgttttgggagaatacatttgagaca |
179 |
Q |
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| T |
49863214 |
aaaattcatagagtaatctacacgaagaaacaagaaaatttgtagagtactgccaaaaatcaaagacaaatgagtgttttgggagaatacatttgagaca |
49863313 |
T |
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| Q |
180 |
acaactattatgtagaaaaatgtagcacaagggcataaacggaaggaatccttgtccaccattagggatttacaatctctattgcatctcagcaaacacc |
279 |
Q |
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| T |
49863314 |
acaactattatgtagaaaaatgtagcacaagggcataaacggaaggaatccttgtccaccataagggatttaca------attgcatctcatcaaacacc |
49863407 |
T |
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| Q |
280 |
aagcctcagtcaaaactccaaattattattcacccggaaatgcttattaccgtgagaatctttatagaaaacagttcacgaatga |
364 |
Q |
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| T |
49863408 |
aagcctcattcaaaactccaa---attattcacccggaaatgcttattaccgcaagaatctttacagcaaacagttcacgaatga |
49863489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 49862942 - 49863029
Alignment:
| Q |
1 |
aatttaaatttacaaaggtagaatatatatttatatttttaaataggcataaaacagagtcattgaaaaggaaagagagaaaattcat |
88 |
Q |
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| T |
49862942 |
aatttaaatttacaaaggtagaatatatatttatatttttaaataggcataaaacagagtcattgaaaaggaaagagagaaaattcat |
49863029 |
T |
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