View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_15 (Length: 397)
Name: NF11992_low_15
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 124 - 387
Target Start/End: Original strand, 39726712 - 39726975
Alignment:
| Q |
124 |
agccccgcctgtctgattagaaatttttggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcccatg |
223 |
Q |
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| T |
39726712 |
agccctgcctgtctgattagaaatttctggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcccatg |
39726811 |
T |
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| Q |
224 |
taacccaacagattataaccgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactag |
323 |
Q |
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| T |
39726812 |
taacccaacagattataaccgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactag |
39726911 |
T |
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| Q |
324 |
tcctggcatgctttgaattccaacaagggtagctgatatcatttgccatgagttgtctcctttg |
387 |
Q |
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| T |
39726912 |
tcctggcatgctttgaattccaacaagggtagctgatatcatttgccatgagttgtctcctttg |
39726975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 142 - 387
Target Start/End: Original strand, 25671269 - 25671514
Alignment:
| Q |
142 |
agaaatttttggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcc-catgtaacccaacagattata |
240 |
Q |
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| T |
25671269 |
agaaatttttgtcctaaagccggtgcacctttaccccagaaaggtaaaagttcatcaccaaaagccattctataagcaacaag-aacccaacagattaat |
25671367 |
T |
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| Q |
241 |
accgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaa |
340 |
Q |
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| T |
25671368 |
actgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcctggcatgctttgta |
25671467 |
T |
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| Q |
341 |
ttccaacaagggtagctgatatcatttgccatgagttgtctcctttg |
387 |
Q |
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| T |
25671468 |
aaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttg |
25671514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 387
Target Start/End: Original strand, 5625597 - 5625722
Alignment:
| Q |
262 |
gccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaattccaacaagggtagctgata |
361 |
Q |
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||||||||||| || || | ||||||||||||||| || || || ||||||| || || || |||||||||||||| | ||||| ||||| | || | |
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| T |
5625597 |
gccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgtagaccaactagggttgatgctg |
5625696 |
T |
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| Q |
362 |
tcatttgccatgagttgtctcctttg |
387 |
Q |
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| T |
5625697 |
tcatttgccatgagttgtctcctttg |
5625722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 13350166 - 13350230
Alignment:
| Q |
171 |
tttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcccatgtaacccaacaga |
235 |
Q |
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|||||||||||| || |||||| | |||||||||||||| |||||||||| ||||||||||| |
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| T |
13350166 |
tttaccccaaaatggaaaaagtgtatcaccaaatgacattctataagcccaaaaaacccaacaga |
13350230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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