View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_17 (Length: 368)
Name: NF11992_low_17
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 38 - 354
Target Start/End: Original strand, 35473797 - 35474113
Alignment:
| Q |
38 |
tatgcacttgatgccctcataacctttctttgttgtagtgtaacaaaccagttttcttttgtatattcaggggttnnnnnnncagtaataaccaaagttg |
137 |
Q |
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| T |
35473797 |
tatgcacttgatgccctcagaacctttctttgttgtagtgtaacaaactagttttcttttgtatattcaggggttaaaaaaacactaataaccaaagttg |
35473896 |
T |
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| Q |
138 |
cnnnnnnnggttcattaacaaatggcttttgagcatgaagacttctttacccaagaatggaaagccattccaaattctggcacagaaacagaaagaaatt |
237 |
Q |
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| T |
35473897 |
caaaaaaaggttcattaacaaatggcttttgagcatgaagacttctttacccaagaatggaaagccattccaaattctggcacagaaacagaaaaaaatt |
35473996 |
T |
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| Q |
238 |
gtgacagttgttttgattgcaatatctgcttagactttgcacatgaaccagtagtcacactctgtggtcacctttactgctggtcctgtatttacaaatg |
337 |
Q |
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| T |
35473997 |
gtgacagttgttttgattgcaatatctgcttagactttgcacatgaaccagtagtcacactctgtggtcacctttactgctggtcctgtatttacaaatg |
35474096 |
T |
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| Q |
338 |
gctctttgtgcaaagtg |
354 |
Q |
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| T |
35474097 |
gctctttgtgcaaagtg |
35474113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 165 - 352
Target Start/End: Original strand, 35467220 - 35467410
Alignment:
| Q |
165 |
tttgagcatgaagacttctttacccaagaatggaaagccattccaaattctggcacagaaacaga--aaga-aattgtgacagttgttttgattgcaata |
261 |
Q |
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| T |
35467220 |
tttgagcatgaagagttctttaaccaagaatggaaagccgatggaaattctgtgacagagacagagaaagagaatattgacaattgttttgattgccaca |
35467319 |
T |
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| Q |
262 |
tctgcttagactttgcacatgaaccagtagtcacactctgtggtcacctttactgctggtcctgtatttacaaatggctctttgtgcaaag |
352 |
Q |
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| T |
35467320 |
tctgcttagattttgcacacgaaccagtagtaaccttatgtggccaccttttctgttggtcttgcatctacaaatggctctttgtgcaaag |
35467410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35473740 - 35473777
Alignment:
| Q |
1 |
aaatttgcttatacttttagtctctattatttgtttat |
38 |
Q |
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| T |
35473740 |
aaatttgcttatacttatagtctctattatttgtttat |
35473777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 359
Target Start/End: Complemental strand, 3663088 - 3662976
Alignment:
| Q |
247 |
gttttgattgcaatatctgcttagactttgcacatgaaccagtagtcacactctgtggtcacctttactgctggtcctgtatttacaaatggctctttgt |
346 |
Q |
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| T |
3663088 |
gttttgattgtaacatctgcttagacttcgccaacgaaccggtagtcaccctttgtggccacctttactgctggccttgcatctacaagtggctacatgt |
3662989 |
T |
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| Q |
347 |
gcaaagtgatgat |
359 |
Q |
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| T |
3662988 |
tcaaagtgatgat |
3662976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 38394388 - 38394333
Alignment:
| Q |
285 |
ccagtagtcacactctgtggtcacctttactgctggtcctgtatttacaaatggct |
340 |
Q |
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| T |
38394388 |
ccagtggtcactctttgtggtcatctctactgctggccctgtatttacaaatggct |
38394333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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