View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_18 (Length: 361)
Name: NF11992_low_18
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 36508066 - 36508416
Alignment:
| Q |
1 |
caattgttaagtaagtaatacataaatttcattgtaatttggtgattctctctagtagtatgtgtatgaaggtgagactagctacttcacaaaatttgaa |
100 |
Q |
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| T |
36508066 |
caattgttaagtaagtaatacataaatttcattgtaatttggtgattctctctagtagtatgtgtatgaaggtgagactagctacttcacaaaatttgaa |
36508165 |
T |
|
| Q |
101 |
tgctcatactgtagaatgctctgatgttggagaatgaatactttgtaagtaaccaccatcataaagcaacgatttcacatactcctctagctttgaagga |
200 |
Q |
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| T |
36508166 |
tgctcatactgtagaatgctctgatgttggggaatgaatactttgtaagtaaccaccatcattaagcaacgatttcacatactcctctagctttgaagga |
36508265 |
T |
|
| Q |
201 |
gtattcccatcataattgtacattattggtaccatccgtgcagcattgagacaaagtttagtaaaagatgagggtaatggatttgtgttcaaacattctt |
300 |
Q |
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| T |
36508266 |
gtattcccatcataattgtacattattggtaccatccgtgcagcattgagacaaagtttagtaaaagatgagggtaatggatttgtgttcaaacattctt |
36508365 |
T |
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| Q |
301 |
tgttgagttgtttccatgcatctgaaatttgttcactcatatgctcctttg |
351 |
Q |
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| T |
36508366 |
tgttgagttgtttccatgcatctgaaatttgttcactcatatgctcctttg |
36508416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 37335094 - 37335126
Alignment:
| Q |
171 |
gatttcacatactcctctagctttgaaggagta |
203 |
Q |
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| T |
37335094 |
gatttcacatactcctctagcttcgaaggagta |
37335126 |
T |
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