View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_2 (Length: 847)
Name: NF11992_low_2
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 357 - 839
Target Start/End: Original strand, 9503561 - 9504043
Alignment:
| Q |
357 |
actgagtttggtggttttacaaacttgtgtagatatgcaaatatacattagtctaccatttgagtctctagcttgcaagctttatatatttactatttac |
456 |
Q |
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| T |
9503561 |
actgagtttggtggttttacaaacttgtatagatatgcaaatatacattagtctaccatttgagtctctagcttgcaagctttatatatttactatttac |
9503660 |
T |
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| Q |
457 |
acacttgcatctgcaacttagtttgaataattatattcaattttctgttgggcaggtttttgggtttgtgcgaagttatgcatgccaaaatattggtctg |
556 |
Q |
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| T |
9503661 |
acacttacatctgcaacttagtttgaataattatattcaattttctgttgggcaggtttttgggtttgtgcgaagttatgcatgccaaaatattggtctg |
9503760 |
T |
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| Q |
557 |
ttactctagtgatgcagagtatacatagaatgatggaaactgaatcattaactgaaggcttgcattccaaatattggttcagaagttgaacaattcaaat |
656 |
Q |
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| T |
9503761 |
ttactctagtgatgcagagtatacatagaatgatggaaactgaatcattaactgaaggcttgcattccaaatattggttcagaagttgaacaattcaaat |
9503860 |
T |
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| Q |
657 |
atttctgtgttgacctccaagcgctgcatacgcctatggtgttatcttgcatttgatcacaagttttttcactgtacttgatgccaagaacttgcttagg |
756 |
Q |
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| T |
9503861 |
atttctgtgatgacctccaagcgctgcatacgcctatggtgttatcttgcatttgatcacaagttttttcactgtacttgatgccaagaacttgcttagg |
9503960 |
T |
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| Q |
757 |
acttgtattattgtggtatatggtggatcatcttgggggtttaaactaattacttctcgatcactggttccctgccctttgct |
839 |
Q |
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| T |
9503961 |
acttgtattattgtggtatatggtggatcatcttgggggtttaaactaattacttctcaatcactggttccctgccctttgct |
9504043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 9503258 - 9503548
Alignment:
| Q |
19 |
atatcagagtagaaataactggactggaggggcatgatagcctgtcactttttatttgaaattgaagatactgattttttgttgaggatcttgcccaatg |
118 |
Q |
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| T |
9503258 |
atatcagaatagaaataactggactggaggggcatgatagcctgtcactttttatttgaaattgaggatactgattttttgttgaggatcttgcccaatg |
9503357 |
T |
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| Q |
119 |
ttataaaacctagaccggtcattgacttgtcaagacatttgatcaatggcacttattaaattggttgaatcctgtaaaccaaaatttagattaaaataaa |
218 |
Q |
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| T |
9503358 |
ttataaaatctagaccggtcattgacttgtcaagacatttgatcaatggcacttattaaattggttgaatcctgtaaaccaaaatttatattaaaataaa |
9503457 |
T |
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| Q |
219 |
aatgtaatatatgcatttgtcaaatagtcatgtgtgtgtgga-aaatattattcgtacacttatattggtgatttgctatggcatagtagt |
308 |
Q |
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| T |
9503458 |
aatgtaatatatgcatttgtcaaatagtcatgtgtgtgtggataagtattattcgtacacttatattggtgatttgctatggcatagtagt |
9503548 |
T |
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