View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_20 (Length: 356)
Name: NF11992_low_20
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 31 - 334
Target Start/End: Complemental strand, 484408 - 484103
Alignment:
| Q |
31 |
gagttaaattttatgcacggacagtgtaaaacttgtctacacgtatatccaatcaaatcatgccgtatttgtatagatatgataatattgagcaatttga |
130 |
Q |
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| T |
484408 |
gagttaaattttatgcacggacagtgtaaaacttgtctacacgtatatccaatcaaatcatgccgtatttgtatagatatgatagtattgagcaatttga |
484309 |
T |
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| Q |
131 |
ttgatgaatgtgtaaaaagcttcacactcccagtgtatacaaattaaattctaac--nnnnnnnnnntcaccttcagcgttcatgatctcgtggttacca |
228 |
Q |
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| T |
484308 |
ttgatgaatgtgtaaaaagcttcacactcccagtgtatacaaattaaattctaacaaaaaaaaaaaatcaccttcagcgttcatgatctcgtggttacca |
484209 |
T |
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| Q |
229 |
ttcatggtgatgaaatttccaccatgaatcgcggcttggcgtttgagcttttccaataagtagaggattttgatttcatcgccaccgcggtcgagcacat |
328 |
Q |
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| T |
484208 |
ttcatggtgatgaaatttccaccatgaatcgcggcttggcgtttgagcttttccaataagtagaggattttgatttcatcgccaccgcggtcgaggacat |
484109 |
T |
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| Q |
329 |
cgccga |
334 |
Q |
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| T |
484108 |
cgccga |
484103 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 19711107 - 19711155
Alignment:
| Q |
42 |
tatgcacggacagtgtaaaacttgtctacacgtatatccaatcaaatca |
90 |
Q |
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| T |
19711107 |
tatgcacagacagtgtaaaacttttctacacttgtattcaatcaaatca |
19711155 |
T |
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