View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11992_low_22 (Length: 317)

Name: NF11992_low_22
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11992_low_22
NF11992_low_22
[»] chr6 (2 HSPs)
chr6 (20-144)||(34787315-34787439)
chr6 (210-317)||(34787142-34787249)
[»] chr2 (1 HSPs)
chr2 (258-314)||(40606933-40606989)
[»] chr8 (2 HSPs)
chr8 (255-310)||(3810689-3810744)
chr8 (255-314)||(40041307-40041367)
[»] chr7 (2 HSPs)
chr7 (259-314)||(26502573-26502628)
chr7 (259-314)||(26590086-26590141)
[»] chr4 (1 HSPs)
chr4 (255-310)||(44253881-44253936)
[»] chr3 (2 HSPs)
chr3 (259-314)||(33573585-33573640)
chr3 (259-313)||(33461231-33461285)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 34787439 - 34787315
Alignment:
Q  20 ggaagaagacatggctagggcttggaaaaccctaacgatagagaaagaggaagaatgtgtttttgtttctgttgagtgtgtaaatctttcttatttaaat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34787439 ggaagaagacatggctagggcttggaaaaccctaacgatagagaaagaggaagaatgtgtttttgtttctgttgagtgtgtaaatctttcttatttaaat 34787340  T
Q  120 aggtttcttcacgggcttttcggct 144  Q
    |||||||||||||||||||||||||    
T  34787339 aggtttcttcacgggcttttcggct 34787315  T

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Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 34787249 - 34787142
Alignment:
Q  210 caattcccttttgtttaaaactttaatcttacatatctttcctacggaagttatatcctacacccctatatttataccttcattccaacatttgacacaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34787249 caattcccttttgtttaaaactttaatcttacatatctttcttacggaagttatatcctacacccctacatttataccttcattccaacatttgacacaa 34787150  T
Q  310 actactgt 317  Q
    ||||||||    
T  34787149 actactgt 34787142  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 40606989 - 40606933
Alignment:
Q  258 agttatatcctacacccctatatttataccttcattccaacatttgacacaaactac 314  Q
    ||||||| || ||||||||  |||||||||||||  |||||||||||||||||||||    
T  40606989 agttataccccacacccctgcatttataccttcaccccaacatttgacacaaactac 40606933  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 3810689 - 3810744
Alignment:
Q  255 ggaagttatatcctacacccctatatttataccttcattccaacatttgacacaaa 310  Q
    |||||||||| || ||||||||| ||||||||||| |  |||||||||||||||||    
T  3810689 ggaagttataccccacacccctacatttataccttgaccccaacatttgacacaaa 3810744  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 40041367 - 40041307
Alignment:
Q  255 ggaagttatatcctacacccct-atatttataccttcattccaacatttgacacaaactac 314  Q
    ||||||||||||| |||||||  | |||||||| ||||| ||||||||| |||||||||||    
T  40041367 ggaagttatatcccacacccccgacatttatacgttcatcccaacatttaacacaaactac 40041307  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 26502573 - 26502628
Alignment:
Q  259 gttatatcctacacccctatatttataccttcattccaacatttgacacaaactac 314  Q
    |||||| || ||||||||| ||||||||||| |  |||||||||||||||||||||    
T  26502573 gttataccccacacccctacatttatacctttaccccaacatttgacacaaactac 26502628  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 26590141 - 26590086
Alignment:
Q  259 gttatatcctacacccctatatttataccttcattccaacatttgacacaaactac 314  Q
    |||||| || ||||||||| ||||||||||| |  |||||||||||||||||||||    
T  26590141 gttataccccacacccctacatttatacctttaccccaacatttgacacaaactac 26590086  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 44253881 - 44253936
Alignment:
Q  255 ggaagttatatcctacacccctatatttataccttcattccaacatttgacacaaa 310  Q
    |||||||||| || |||||| ||||||||||||||||  ||||||||| |||||||    
T  44253881 ggaagttataccccacacccatatatttataccttcaccccaacatttaacacaaa 44253936  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 33573585 - 33573640
Alignment:
Q  259 gttatatcctacacccctatatttataccttcattccaacatttgacacaaactac 314  Q
    |||||| |||||||||||| ||||||||||| |  ||||||||| |||||||||||    
T  33573585 gttataccctacacccctacatttatacctttaccccaacatttaacacaaactac 33573640  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 33461231 - 33461285
Alignment:
Q  259 gttatatcctacacccctatatttataccttcattccaacatttgacacaaacta 313  Q
    |||||| || ||||||||| ||||||||||| |  ||||||||||||||||||||    
T  33461231 gttataccccacacccctacatttatacctttaccccaacatttgacacaaacta 33461285  T

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