View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_24 (Length: 316)
Name: NF11992_low_24
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 63 - 242
Target Start/End: Complemental strand, 30677533 - 30677355
Alignment:
| Q |
63 |
atagttgagaaatgttagggtcacacctttggacacactcttttaacacacacccacaacaatcatagctcaccacatcattattttctctctcactagt |
162 |
Q |
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| T |
30677533 |
atagttgagaaatgctaggatcacacctttggacacactcttttaacacacacccacaccaatcatagctgatcacatccttattttttttctcactagt |
30677434 |
T |
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| Q |
163 |
ttgactgcaactttgtcttctccaagtttaaacgcatcagaacaaagaaaaacaacaagcttcatggcccattctccttc |
242 |
Q |
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| T |
30677433 |
ttgactgcaac-ttgtcttctccaagtttaaacgcatcagaacatagaaaaacaacaagcttcatggcccattctccttc |
30677355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 30677336 - 30677270
Alignment:
| Q |
234 |
ttctccttcggattcaatctgtcactccttccaatttgtatcacacaaactatgtcgtacttctccc |
300 |
Q |
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| T |
30677336 |
ttctccttcggattcagtctgtcgctccttccaatttgtatcacacaaactatgtcgtacttctccc |
30677270 |
T |
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