View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11992_low_25 (Length: 306)
Name: NF11992_low_25
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 41939777 - 41940062
Alignment:
| Q |
1 |
ggatctcaatataggaaaggaccggagtctctaaaagggccaaaaccagcatcatcttcatcaatgctgaaactaccatgttactgttgtgctgagggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41939777 |
ggatctcaatataggaaaggaccggagtctctaaaagggccaaaaccagcatcatcttcatcaatgctgaaactaccatgttactgttgtgctgagggtt |
41939876 |
T |
|
| Q |
101 |
gcagaaacaatataaactatccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41939877 |
gcagaaacaatataaactatccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtg |
41939976 |
T |
|
| Q |
201 |
cagaaagtgtaggaagacatttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgtatctgtg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41939977 |
cagaaagtgtaggaagacatttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgtatctgtg |
41940062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 21035710 - 21035651
Alignment:
| Q |
220 |
tttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgt |
279 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||| |||| |
|
|
| T |
21035710 |
tttgctgttagaggagattggagaactcatgagaagaattgtggaaagctttggtattgt |
21035651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 22296040 - 22295873
Alignment:
| Q |
119 |
atccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagac |
218 |
Q |
| |
|
|||||||| |||| ||||| || ||||||||||| |||||||||||||||||||| ||||| |||| || |||| | ||| ||||||||| |||| | |
|
|
| T |
22296040 |
atccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggtgtagaaagtgtgggaaacc |
22295941 |
T |
|
| Q |
219 |
atttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgtatctgtg |
286 |
Q |
| |
|
|||||| || ||||| || ||||| || |||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
22295940 |
atttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtg |
22295873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 286
Target Start/End: Original strand, 36569923 - 36570136
Alignment:
| Q |
73 |
ctaccatgttactgttgtgctgagggttgcagaaacaatataaactatccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaaga |
172 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||| || | ||||||| |||| || || |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
36569923 |
ctaccttgttactgttgtgcaccagggtgcagaaacaacattgatcatccaagagcaaagcctctcaaagattttagaacacttcaaacacattacaaga |
36570022 |
T |
|
| Q |
173 |
gaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagacatttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttg |
272 |
Q |
| |
|
|||| || ||| || ||||| ||| ||||| || || ||| | |||||||| |||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
36570023 |
gaaaacatggaattaagccattcatgtgtagaaaatgcagcaaggcttttgctgttagaggagattggagaactcatgaaaagaattgtggaaagctttg |
36570122 |
T |
|
| Q |
273 |
gttttgtatctgtg |
286 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
36570123 |
gtattgtatctgtg |
36570136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 279
Target Start/End: Original strand, 41939458 - 41939618
Alignment:
| Q |
119 |
atccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagac |
218 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||| || |||| ||| ||||||||| | || | |
|
|
| T |
41939458 |
atccaagagcaaaaccactgaaagattttagaacacttcaaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagc |
41939557 |
T |
|
| Q |
219 |
atttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgt |
279 |
Q |
| |
|
|||||| || ||||| || ||||| ||||| ||||| || |||||||| ||||||| |||| |
|
|
| T |
41939558 |
atttgcagtaagaggtgactggagaactcacgagaaaaactgtgggaaactttggtattgt |
41939618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 36260078 - 36259961
Alignment:
| Q |
62 |
caatgctgaaactaccatgttactgttgtgctgagggttgcagaaacaatataaactatccaagggcaagaccactgaaagatttcagaacccttcaaac |
161 |
Q |
| |
|
||||||| | |||||||||||| ||||||||| | ||||||| ||||| || || ||||||| |||| |||| |||| ||||||||||| || ||||| |
|
|
| T |
36260078 |
caatgctaagactaccatgttattgttgtgctcacggttgcaagaacaacatcaatcatccaagagcaaaaccattgaaggatttcagaactctccaaac |
36259979 |
T |
|
| Q |
162 |
acactacaagagaaagca |
179 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
36259978 |
tcattacaaaagaaagca |
36259961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 19333490 - 19333551
Alignment:
| Q |
202 |
agaaagtgtaggaagacatttgctgtgagaggagattggaggactcatgagaagaattgtgg |
263 |
Q |
| |
|
||||| ||| |||| ||||||||||| | ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
19333490 |
agaaaatgtgggaaaacatttgctgtcaaaggtgattggaggactcatgaaaagaattgtgg |
19333551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 39300485 - 39300634
Alignment:
| Q |
137 |
tgaaagatttcagaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagacatttgctgtgagaggaga |
236 |
Q |
| |
|
|||| ||||||||||| || || |||||||||||||| ||||| || ||| ||||| || |||| ||| ||||| |||| || |||| ||| || |
|
|
| T |
39300485 |
tgaaggatttcagaacactgcagacacactacaagaggaagcatggttcaaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtga |
39300584 |
T |
|
| Q |
237 |
ttggaggactcatgagaagaattgtgggaagctttggttttgtatctgtg |
286 |
Q |
| |
|
|||||| ||||||||||| || ||||| |||| |||| |||||||||||| |
|
|
| T |
39300585 |
ttggagaactcatgagaaaaactgtggcaagcgttggctttgtatctgtg |
39300634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University