View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11992_low_27 (Length: 303)

Name: NF11992_low_27
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11992_low_27
NF11992_low_27
[»] chr2 (12 HSPs)
chr2 (1-293)||(39468619-39468911)
chr2 (15-174)||(39478711-39478863)
chr2 (6-290)||(39397283-39397572)
chr2 (109-173)||(39216052-39216117)
chr2 (67-161)||(39162221-39162314)
chr2 (67-161)||(39206880-39206973)
chr2 (67-173)||(39388695-39388798)
chr2 (125-173)||(39197720-39197769)
chr2 (67-173)||(39381039-39381142)
chr2 (125-173)||(39191010-39191059)
chr2 (225-262)||(39370615-39370652)
chr2 (225-265)||(39216151-39216191)
[»] chr6 (2 HSPs)
chr6 (61-98)||(16113608-16113645)
chr6 (123-174)||(16113655-16113706)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 39468619 - 39468911
Alignment:
Q  1 tatttggataatatttttcacgcttgaacattttatgaatctcttaaatccnnnnnnncgcttgtgtttttatccatggctaaggtttaattgtaataca 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  39468619 tatttggataatatttttcacccttgaacattttatgaatctcttaaatccaaaaaaacgcttgtgtttttatccatggctaaggtttaattgtaataca 39468718  T
Q  101 tggtactgtacttctaatgatagattagtatattaatttagttttaatttttcaagtatatgcaaatagtgtaaactttagagttaaagtgttgtgtcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39468719 tggtactgtacttctaatgatagattagtatattaatttagttttaatttttcaagtatatgcaaatagtgtaaactttagagttaaaatgttgtgtcaa 39468818  T
Q  201 tatgctaacaaacattaagagcatttaataatcctattagtgcaactgtttctagtcttgtttatgaaccaatccaacactatctccattcat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39468819 tatgctaacaaacattaagagcatttaataatcctattagtgcaactgtttctagtcttgtttatgaaccaatccaacactatctccattcat 39468911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 39478863 - 39478711
Alignment:
Q  15 ttttcacgcttgaacattttatgaatctcttaaatccnnnnnnncgcttgt-gtttttatccatggctaaggtttaattgtaatacatggtactgtactt 113  Q
    ||||||| ||||||||||||||||||||||||||| |       | |||   ||||||||||| ||||||||||||||| |||| ||     |||| ||     
T  39478863 ttttcacccttgaacattttatgaatctcttaaatgcaaaaaaactctttacgtttttatccacggctaaggtttaattataatcca-----ctgtgct- 39478770  T
Q  114 ctaatgatagattagtatattaatttagttttaatttttcaagtatatgcaaatagtgtaa 174  Q
      |||||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||    
T  39478769 --aatgatagattagtattttaatgtagtttaaattttccaagtatatgcaaatagtgtaa 39478711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 39397572 - 39397283
Alignment:
Q  6 ggataatatttttcacgcttgaacattttatgaatctcttaaatccnnnnnnncgcttgtgtttttatccatggctaaggtttaattgtaatacatggta 105  Q
    |||| ||||||||||| ||||||| || ||||||||||||| || |       | |||| |||||||| |||||||||||||| ||| ||||| ||| ||    
T  39397572 ggattatatttttcactcttgaaccttctatgaatctcttatatgcaaaaaa-ctcttgcgtttttattcatggctaaggttttattataatatatgcta 39397474  T
Q  106 ctgtacttctaatgatagattagtatattaatttagttttaatttttcaagtatatgcaaatagtgtaaactttagagttaaagtgttgtgtcaatatgc 205  Q
    ||||| | ||||||||   ||||||| ||||| || ||| ||||||| ||| || |||||||| ||||| || | |||||||| ||| |  |  |||| |    
T  39397473 ctgtattgctaatgatttgttagtattttaatgtattttaaattttttaaggatttgcaaataatgtaatctct-gagttaaaatgtgggtttgatatcc 39397375  T
Q  206 taacaaa-cattaagag-catttaataatcct----attagtgcaactgtttctagtcttgtttatgaacca-atccaacactatctccatt 290  Q
    ||||||| |||| || | || ||| || ||||    ||| |||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  39397374 taacaaaccattgagggtcacttagtagtcctattgatttgtgcaactatttctagtcttgtttatgaaccatatctaacactatctccatt 39397283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 39216052 - 39216117
Alignment:
Q  109 tacttctaatgatagattagtatattaatttagttttaatttttcaagtata-tgcaaatagtgta 173  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||    
T  39216052 tactgctaatgaaagattagtatattgatttagttttaatttttcaagtatatttcaaatagtgta 39216117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 39162221 - 39162314
Alignment:
Q  67 tttttatccatggctaaggtttaattgtaatac-atggtactgtacttctaatgatagattagtatattaatttagttttaatttttcaagtatat 161  Q
    ||||||||||||||||  |||| ||| |||||  ||||||||  ||| |||||||  ||||||||||||||| ||||||||||||||||| |||||    
T  39162221 tttttatccatggctatagttttattataatattatggtact--actgctaatgaaggattagtatattaatgtagttttaatttttcaattatat 39162314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 39206973 - 39206880
Alignment:
Q  67 tttttatccatggctaaggtttaattgtaatac-atggtactgtacttctaatgatagattagtatattaatttagttttaatttttcaagtatat 161  Q
    ||||||||||||||||  |||| ||| |||||  ||||||||  ||| |||||||  ||||||||||||||| ||||||||||||||||| |||||    
T  39206973 tttttatccatggctatagttttattataatattatggtact--actgctaatgaaggattagtatattaatgtagttttaatttttcaattatat 39206880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 39388798 - 39388695
Alignment:
Q  67 tttttatccatggctaaggtttaattgtaatac-atggtactgtacttctaatgatagattagtatattaatttagttttaatttttcaagtata-tgca 164  Q
    |||||||||||||||||||||| | | |||||  |||||||||      |||||| |||||||||||||||| || ||||||||||||||||||| ||||    
T  39388798 tttttatccatggctaaggttttactataatattatggtactga-----taatgaaagattagtatattaatgtaattttaatttttcaagtatattgca 39388704  T
Q  165 aatagtgta 173  Q
    || ||||||    
T  39388703 aaaagtgta 39388695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 39197769 - 39197720
Alignment:
Q  125 ttagtatattaatttagttttaatttttcaagtata-tgcaaatagtgta 173  Q
    ||||||||||||| |||||||||||||||||||||| |||||| ||||||    
T  39197769 ttagtatattaatgtagttttaatttttcaagtatattgcaaaaagtgta 39197720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 39381142 - 39381039
Alignment:
Q  67 tttttatccatggctaaggtttaattgtaatac-atggtactgtacttctaatgatagattagtatattaatttagttttaatttttcaagtata-tgca 164  Q
    ||||||| ||||||||||| |||||| |||||  |||||||||     ||| ||| ||| ||||||| |||| |||||||||||||||||||||| ||||    
T  39381142 tttttattcatggctaaggcttaattataatattatggtactg-----ctagtgaaagagtagtatagtaatgtagttttaatttttcaagtatattgca 39381048  T
Q  165 aatagtgta 173  Q
    ||| |||||    
T  39381047 aatggtgta 39381039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 39191059 - 39191010
Alignment:
Q  125 ttagtatattaatttagttttaatttttcaagtata-tgcaaatagtgta 173  Q
    ||||||||||||| || ||||||||||||||||||| |||||| ||||||    
T  39191059 ttagtatattaatgtatttttaatttttcaagtatattgcaaaaagtgta 39191010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 39370615 - 39370652
Alignment:
Q  225 ttaataatcctattagtgcaactgtttctagtcttgtt 262  Q
    |||||||||||||||||||||||  |||||||||||||    
T  39370615 ttaataatcctattagtgcaactacttctagtcttgtt 39370652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 39216151 - 39216191
Alignment:
Q  225 ttaataatcctattagtgcaactgtttctagtcttgtttat 265  Q
    |||||| ||| |||||||||||| |||||||||||||||||    
T  39216151 ttaatagtccaattagtgcaactatttctagtcttgtttat 39216191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 16113608 - 16113645
Alignment:
Q  61 cttgtgtttttatccatggctaaggtttaattgtaata 98  Q
    |||||||||||||||||||||||||||||||| |||||    
T  16113608 cttgtgtttttatccatggctaaggtttaattataata 16113645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 16113655 - 16113706
Alignment:
Q  123 gattagtatattaatttagttttaatttttcaagtatatgcaaatagtgtaa 174  Q
    ||||| ||| ||||| |||||| |||||| ||||||||||||||||||||||    
T  16113655 gattaatattttaatgtagtttaaattttccaagtatatgcaaatagtgtaa 16113706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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