View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_32 (Length: 261)
Name: NF11992_low_32
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 34444366 - 34444136
Alignment:
| Q |
19 |
tggaagaaatcacggtcactccataattttgttgaagttttaaagtgtaatttttatcaaaattagagtgacac--tctgattacgctgaagtaattgtg |
116 |
Q |
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| T |
34444366 |
tggaagaaatcatggtcactccataattttgttgaagttttaaagtgtaatttttatcaaaattagagtgacacactctgattacgctgaactaattgtg |
34444267 |
T |
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| Q |
117 |
aatccaaactgtggagaatgtgattttcttaaaaatgtatgttgctaaaagaatcacaatagtacctccattttcttcatttccatttcagcttttctta |
216 |
Q |
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| T |
34444266 |
aatccaaacttttgagaatgtgattttcttaaaaatgtatgttgctaaaagaatcacaatagtacctccattttcttcatttccatttcagcttttctta |
34444167 |
T |
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| Q |
217 |
tctgatgattttcccaggcttgaatcttcat |
247 |
Q |
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| T |
34444166 |
tctgatgattttcccaggcttgaatcttcat |
34444136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 6019598 - 6019646
Alignment:
| Q |
44 |
attttgttgaagttttaaagtgtaatttttatcaaaattagagtgacac |
92 |
Q |
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| T |
6019598 |
attttgttgaagttataaagtgtagtttttgtcaaaattatggtgacac |
6019646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 5084094 - 5084055
Alignment:
| Q |
44 |
attttgttgaagttttaaagtgtaatttttatcaaaatta |
83 |
Q |
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| T |
5084094 |
attttgttgaaattttaaagtgtaaattttatcaaaatta |
5084055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 16067532 - 16067576
Alignment:
| Q |
44 |
attttgttgaagttttaaagtgtaatttttatcaaaattagagtg |
88 |
Q |
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| T |
16067532 |
attttgttgatgctttaaagtgtagtttttatcaaaattacagtg |
16067576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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