View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_33 (Length: 245)
Name: NF11992_low_33
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 3351841 - 3351759
Alignment:
| Q |
23 |
gcctttgcatatatccctccttccacaattgtatgacaatgtgacctttgcatatattcctccttccacaaacttcacttctc |
105 |
Q |
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| T |
3351841 |
gcctttgcatatatccctccttccacaattgtatgacaatgtgacctttgcatatattcctccttccacaaacttcacttctc |
3351759 |
T |
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Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 3351694 - 3351612
Alignment:
| Q |
106 |
atccttagaaatttgacatatattgctggaaatcttttgtaggtaaatataaaaaagttgacatctagtaattgaacaccata |
188 |
Q |
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| T |
3351694 |
atccttagaaatttgacatatattgctggaaatcttttgtaggtaaatataaaaaagttgacatctagtaattgaacaacata |
3351612 |
T |
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