View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_35 (Length: 239)
Name: NF11992_low_35
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 41407541 - 41407763
Alignment:
| Q |
16 |
aatcaaacgtttggtacaattgtgtttgaattttttgaactacattaataaa-tacatacatagaagtacaaagaaaaagggataaattgtgcaatttat |
114 |
Q |
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| T |
41407541 |
aatcaaacgtttggtacaattgtgtttgaattttttgaactacattaataaaatacatacatagaagtacaaagaaaaagggataaattgtgcaatttat |
41407640 |
T |
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| Q |
115 |
gaacatactattatttacggtaaaactattgtctattagctaaacatcctaatgcgtaacctctattcgactaatttttgaagctg-ttgcatgataact |
213 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
41407641 |
aaacata---ttatttacggtaaaactattgtctattagccaaacatcgtagtgcgtaatctctattcgactaatttttgaagctgtttgcatgataact |
41407737 |
T |
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| Q |
214 |
cacttggtaataggatcgtggcactc |
239 |
Q |
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||||||||||||||||||||| |||| |
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| T |
41407738 |
cacttggtaataggatcgtggtactc |
41407763 |
T |
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