View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11992_low_38 (Length: 212)

Name: NF11992_low_38
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11992_low_38
NF11992_low_38
[»] chr4 (7 HSPs)
chr4 (1-189)||(4469116-4469304)
chr4 (87-189)||(11307292-11307396)
chr4 (118-174)||(47680706-47680762)
chr4 (77-157)||(11307613-11307695)
chr4 (118-157)||(51681335-51681374)
chr4 (123-174)||(56160770-56160821)
chr4 (118-174)||(8445940-8445996)
[»] chr8 (6 HSPs)
chr8 (82-175)||(5981458-5981553)
chr8 (78-159)||(1409220-1409301)
chr8 (113-189)||(36046842-36046918)
chr8 (118-175)||(5981750-5981807)
chr8 (110-146)||(13758985-13759021)
chr8 (110-146)||(23140563-23140599)
[»] chr6 (3 HSPs)
chr6 (78-189)||(7301585-7301699)
chr6 (118-158)||(22612271-22612311)
chr6 (110-146)||(11554343-11554379)
[»] chr3 (3 HSPs)
chr3 (118-192)||(51677597-51677671)
chr3 (120-175)||(53981614-53981669)
chr3 (118-175)||(32201124-32201181)
[»] chr1 (2 HSPs)
chr1 (77-176)||(43834537-43834638)
chr1 (118-164)||(26231682-26231728)
[»] chr5 (1 HSPs)
chr5 (138-175)||(30886438-30886475)
[»] chr2 (3 HSPs)
chr2 (77-189)||(19548186-19548299)
chr2 (119-173)||(19547956-19548010)
chr2 (110-146)||(41752933-41752969)
[»] scaffold0548 (1 HSPs)
scaffold0548 (78-157)||(4102-4183)
[»] chr7 (1 HSPs)
chr7 (110-146)||(4109583-4109619)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 4469116 - 4469304
Alignment:
Q  1 ggttcctcacatttgaggaaatattggatatataagagatgggacgatggtacaagtataagtgatgtgtcttgaagaaatgttgtatatataagagagg 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4469116 ggttcctcacatttgaggaaatgttggatatataagagatgggacgacggtacaagtataagtgatgtgccttgaagaaatgttgtatatataagagagg 4469215  T
Q  101 ggacacacgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtcgctcc 189  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  4469216 ggacacacgtctaatgtcttaaggttttgggtgaaaatgtgatgtctgagtctcttaattgtcctagacgtttagtatattgtcgctcc 4469304  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 11307396 - 11307292
Alignment:
Q  87 atatataagagaggggacac--acgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtc 184  Q
    ||||||||||||||||||||  |  ||| ||  ||||| |||||||||| | ||||||||||||||||||||||| |||||  || |||||  |||||||    
T  11307396 atatataagagaggggacacgtatacctgatgccttaatgttttgggtggagatgtggtgtctaagtctcttagtggtcctgaacatttagcttattgtc 11307297  T
Q  185 gctcc 189  Q
    |||||    
T  11307296 gctcc 11307292  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 47680706 - 47680762
Alignment:
Q  118 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 174  Q
    |||||||||||||||| | ||||||||||||||||||||| | ||||| ||||||||    
T  47680706 cttaaggttttgggtggagatgtggtgtctaagtctcttattggtcctggacgttta 47680762  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 11307695 - 11307613
Alignment:
Q  77 gaaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctctta 157  Q
    ||||||||| |||||| ||||||||||||||    ||| || |||||| |||||||||| | ||||||||||||||| |||||    
T  11307695 gaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtctaagtgtctta 11307613  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 51681335 - 51681374
Alignment:
Q  118 cttaaggttttgggtgaaaatgtggtgtctaagtctctta 157  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  51681335 cttaaggttttgggtggagatgtggtgtctaagtctctta 51681374  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 56160770 - 56160821
Alignment:
Q  123 ggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 174  Q
    ||||||||||| |||| |||||||||||||||||||| ||| |||| |||||    
T  56160770 ggttttgggtggaaatatggtgtctaagtctcttagtggtcttagatgttta 56160821  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 8445940 - 8445996
Alignment:
Q  118 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 174  Q
    ||||||||||| |||| | |||||| |||||||||||||| ||||||| || |||||    
T  8445940 cttaaggttttaggtggagatgtggcgtctaagtctcttatttgtcctggaagttta 8445996  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 5981553 - 5981458
Alignment:
Q  82 gttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 175  Q
    |||| |||||||||||||||||| || |  ||| ||  |||||||||||||||| ||||||||||||||||||||||| | || || |||||||||    
T  5981553 gttggatatataagagaggggacccatgtacctgatgccttaaggttttgggtggaaatgtggtgtctaagtctcttattggttctggacgtttag 5981458  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 1409220 - 1409301
Alignment:
Q  78 aaatgttgtatatataagagaggggacacacgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagt 159  Q
    |||||||| ||||||||| |||||||  ||   ||||| ||||||| |||||| |||||||||||||||||||| |||||||    
T  1409220 aaatgttggatatataagggaggggatccatagctaatttcttaagattttggatgaaaatgtggtgtctaagtttcttagt 1409301  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 36046918 - 36046842
Alignment:
Q  113 aatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtcgctcc 189  Q
    ||||||||||| |||| | |||| ||||||| ||||||| | |||||  ||||||||||||||| ||||||||||||    
T  36046918 aatatcttaagattttagatgaagatgtggtatctaagttttttagtgatcctagacgtttagtctattgtcgctcc 36046842  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 5981807 - 5981750
Alignment:
Q  118 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 175  Q
    |||||||||||||||| | ||||||||||||||||||||| | ||||| || ||||||    
T  5981807 cttaaggttttgggtggagatgtggtgtctaagtctcttactggtccttgaagtttag 5981750  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 13758985 - 13759021
Alignment:
Q  110 cctaatatcttaaggttttgggtgaaaatgtggtgtc 146  Q
    |||||| |||||||||||||||| |||||||||||||    
T  13758985 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 13759021  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 23140599 - 23140563
Alignment:
Q  110 cctaatatcttaaggttttgggtgaaaatgtggtgtc 146  Q
    |||||| |||||||||||||||| |||||||||||||    
T  23140599 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 23140563  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 7301699 - 7301585
Alignment:
Q  78 aaatgttgtatatataagagaggggacacacg--cctaatatcttaaggtttt-gggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 174  Q
    |||||||  |||||||| ||||||||||||    ||||||||||||||||||| |||| | | | |||||||||||||||||||| |||||||| |||||    
T  7301699 aaatgttagatatataaaagaggggacacatatacctaatatcttaaggtttttgggtaagagtttggtgtctaagtctcttagtggtcctagaggttta 7301600  T
Q  175 gtatattgtcgctcc 189  Q
    |   |||||||||||    
T  7301599 gcccattgtcgctcc 7301585  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 22612311 - 22612271
Alignment:
Q  118 cttaaggttttgggtgaaaatgtggtgtctaagtctcttag 158  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  22612311 cttaaggttttgggtgtagatgtggtgtctaagtctcttag 22612271  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 11554379 - 11554343
Alignment:
Q  110 cctaatatcttaaggttttgggtgaaaatgtggtgtc 146  Q
    |||||| |||||||||||||||| |||||||||||||    
T  11554379 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 11554343  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 51677597 - 51677671
Alignment:
Q  118 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtcgctcctga 192  Q
    ||||||||||| | || | ||||| ||||||||||||||||| ||||||||||||||| | ||||| ||||||||    
T  51677597 cttaaggtttttgatggagatgtgatgtctaagtctcttagtagtcctagacgtttagcacattgttgctcctga 51677671  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 53981614 - 53981669
Alignment:
Q  120 taaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 175  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||| | |||||||||    
T  53981614 taaggttttgggtggagatgtggtgtctaagtcttttagtggtcttggacgtttag 53981669  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 32201124 - 32201181
Alignment:
Q  118 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 175  Q
    |||||| ||||||||| | ||||||||||||||| ||||||| |||||  ||||||||    
T  32201124 cttaagattttgggtggagatgtggtgtctaagtttcttagtggtcctgaacgtttag 32201181  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 43834537 - 43834638
Alignment:
Q  77 gaaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 174  Q
    ||||||||| |||||||||||||||||| ||    |||||| |||||||||||| | || | |||||| |||||||||||||  | ||||||||||||||    
T  43834537 gaaatgttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgtggcgtctaagtctcttgatggtcctagacgttta 43834636  T
Q  175 gt 176  Q
    ||    
T  43834637 gt 43834638  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 26231728 - 26231682
Alignment:
Q  118 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcc 164  Q
    |||||||||||||||| | |||||||||| |||||||||||| ||||    
T  26231728 cttaaggttttgggtggagatgtggtgtccaagtctcttagtggtcc 26231682  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 30886475 - 30886438
Alignment:
Q  138 tgtggtgtctaagtctcttagttgtcctagacgtttag 175  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30886475 tgtggtgtctaagtctcttagtggtcctagacgtttag 30886438  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 19548186 - 19548299
Alignment:
Q  77 gaaatgttgtatatataagagaggggacacacgc--ctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 174  Q
    ||||||||| |||||||||||||| ||| ||     ||||| ||||||||||||||||| | ||||||||| |||||||||| |  ||||||||| ||||    
T  19548186 gaaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgtataagtctctttg-ggtcctagacattta 19548284  T
Q  175 gtatattgtcgctcc 189  Q
    | | ||||| |||||    
T  19548285 gcacattgttgctcc 19548299  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 19547956 - 19548010
Alignment:
Q  119 ttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttt 173  Q
    ||||||||||| ||| ||||||||||||||| | ||||||| ||||| |||||||    
T  19547956 ttaaggttttgtgtggaaatgtggtgtctaaatatcttagtggtcctggacgttt 19548010  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 41752969 - 41752933
Alignment:
Q  110 cctaatatcttaaggttttgggtgaaaatgtggtgtc 146  Q
    |||||| |||||||||||||||| |||||||||||||    
T  41752969 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 41752933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 4183 - 4102
Alignment:
Q  78 aaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctctta 157  Q
    |||||||| |||||| ||||||||||||||    ||| || |||||| |||||||||| | ||||||||||||||| |||||    
T  4183 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtctaagtgtctta 4102  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 4109619 - 4109583
Alignment:
Q  110 cctaatatcttaaggttttgggtgaaaatgtggtgtc 146  Q
    |||||| | ||||||||||||||||||||||||||||    
T  4109619 cctaatgttttaaggttttgggtgaaaatgtggtgtc 4109583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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