View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_5 (Length: 533)
Name: NF11992_low_5
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 6718111 - 6718592
Alignment:
| Q |
18 |
aaaatatcatcctataagggataaatgcataatccacgtctatacctatatataatcgaatacttaataatatttttctgtaatatcctttcaagatata |
117 |
Q |
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| T |
6718111 |
aaaatatcatcctacaagggataaatgcataatccacgtctatacctatatataatcgaatacttaataatattttattgtaatatcctttcaagatata |
6718210 |
T |
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| Q |
118 |
ttttattgtgatatgtatatacaagtatatgaaaaacgaatcaataaattggtttagttttaaatggttgatgaatttcatcaaagaacgaattgtttaa |
217 |
Q |
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| T |
6718211 |
ttttattgtgatatgtatatacaagtatatgaaaaacgaatcaataaattggtttagttttaaatggttgatgaatttcatcaaagaacgaattgtttag |
6718310 |
T |
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| Q |
218 |
gagaatcttagttagatttttggatgaaacaattcttagatacgtccaatgtattaaattataggctaaaaagtttggcggcacagtaaattttaattag |
317 |
Q |
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| T |
6718311 |
gagaatcttagttagatttttggatgaaacaattattagatacgtccaatatattaaattacaggctaaaaagtttggcgacatagtaaattttaattag |
6718410 |
T |
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| Q |
318 |
tttgtttacgttttcttttttgcgtgggggtgaggttttggttgtggcgatgatgttgaggagt-gggtgggctgtttatgtttgggggtttgttcttgg |
416 |
Q |
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| T |
6718411 |
tttgtttacgttttcttttttgggtgggggtgaggttttggttgtggcgatgatgttgaggagtggggtgggctgtttatgtttgggggtttgttcgtg- |
6718509 |
T |
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| Q |
417 |
nnnnnnnnnggtgtttgctcgtgtgatcttagataagtgtctaactccgcttatgttagcttgtgtcagttttaggtcttcatttggcttcttcctggtc |
516 |
Q |
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| T |
6718510 |
---------------------tgtgatcttagataagtgtctaactccgcttatgttagcttgtgtcagttttaggtcttcatttggcttcttcctggtc |
6718588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 19134237 - 19134167
Alignment:
| Q |
335 |
ttttgcgtgggggtgaggttttggttgtggcgatgatgttgaggagtgggtgggctgtttatgtttggggg |
405 |
Q |
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| T |
19134237 |
ttttgcatggtggtgaggttttggttgtggtgatgatgaggaggagtgtgtgggttgtttttgttttgggg |
19134167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 35257499 - 35257535
Alignment:
| Q |
179 |
aaatggttgatgaatttcatcaaagaacgaattgttt |
215 |
Q |
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| T |
35257499 |
aaatggttaatgaatttcatcaaagaaagaattgttt |
35257535 |
T |
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