View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_low_6 (Length: 511)
Name: NF11992_low_6
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 39659252 - 39658876
Alignment:
| Q |
1 |
tttttcgaccgtcttccaaatactgttgtcattaatccacaacctgcttttctctctggcgatatgtctcccannnnnnnctaatcttttttctatgtat |
100 |
Q |
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| T |
39659252 |
tttttcgaccgtcttccaaatactgttgtcattaatccacaacctgcttttctctctggcgaaatgtctcccatttttttctaatcttttttctatgtat |
39659153 |
T |
|
| Q |
101 |
aatgttacaaagaatttgtaaaaatatgttacaaattataaaacatttgaacaccttagaatacaatatgtaaagacatatatttgaattttatgatttt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39659152 |
aatgttacaaagaatttgtaaaaatatgctacaaattataaaacatttgaacaccttagaatacaatatgtaaagacatatatttgaattttatgatttt |
39659053 |
T |
|
| Q |
201 |
ttgttccaggagataatctacaatgcctcctcctggagaggctgccaagacattatattataattatattatatctctcttttgaatttgatgatcatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39659052 |
ttgttccaggagataatctacaatgcctcctcctggagaggctgccaagacattatattataattatattatatctctcttttgaatttgatgatcatga |
39658953 |
T |
|
| Q |
301 |
gagggattaatttaaattcttcacacaaaaaataagagacagaattagctgtattgttgaaaatcaaatgctgcaat |
377 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39658952 |
gaggaattaatttaaattcttcacacaaaaaataagagacagaattagctgtattgttgaaaatcaaatgctgcaat |
39658876 |
T |
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