View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11992_low_9 (Length: 458)

Name: NF11992_low_9
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11992_low_9
NF11992_low_9
[»] chr7 (10 HSPs)
chr7 (18-449)||(31062443-31062874)
chr7 (21-104)||(31162856-31162939)
chr7 (21-104)||(31145032-31145115)
chr7 (21-102)||(31049960-31050041)
chr7 (25-119)||(31202680-31202774)
chr7 (21-102)||(31107452-31107533)
chr7 (372-446)||(31050245-31050319)
chr7 (372-429)||(31107772-31107829)
chr7 (372-429)||(31145373-31145430)
chr7 (372-429)||(31163197-31163254)
[»] chr1 (1 HSPs)
chr1 (372-449)||(31914218-31914295)


Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 31062443 - 31062874
Alignment:
Q  18 acaataaacaccttgagtatatatggttgaacttgatttggccctctagatgagaatgaagccataactggagctggctttcttccaaagagtgttattg 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31062443 acaataaacaccttgagtatatatggttgaacttgatttggacctctagatgagaatgaagccataactggagctggctttcttccaatgagtgttattg 31062542  T
Q  118 cttgggaaaatcttatttttgtacccgactctattgtatccctgcaaataaaaatatatgattatgtataaataattcccttaatcttgtaacatgtgaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  31062543 cttgggaaaatcttatttttgtacccgactctattgtatccctgcaaataaaaatatatgattatgtataaatagttcccttaatcttgtaacatgtgat 31062642  T
Q  218 tttatgatgttacaagaagggtaaattttcttttttgaaggaaagaagggtgcatataatttcactnnnnnnnggttcatgtaattaataattacgtggc 317  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  31062643 tttatgatgttacaagaagggtacattttcttttttgaaggaaagaagggtgcatataatttcactaaaaaaaggttcatgtaattaataattacgtggc 31062742  T
Q  318 agttacgcctaaacgaggaggtgctgtaaccgctgcttgcccatttccaccgacagtagacaaaacatgaggctcagaaagaagtgtattcccactaact 417  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31062743 agttacgcctaaacgaggaggtgctgtaatcgctgcttgcccatttccaccaacagtagacaaaacatgaggctcagaaagaagtgtattcccactaact 31062842  T
Q  418 tttggttgattttccaaaaacattccctttgc 449  Q
    ||||||||||||||||||||||||||||||||    
T  31062843 tttggttgattttccaaaaacattccctttgc 31062874  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 31162856 - 31162939
Alignment:
Q  21 ataaacaccttgagtatatatggttgaacttgatttggccctctagatgagaatgaagccataactggagctggctttcttcca 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31162856 ataaacaccttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggctttcttcca 31162939  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 31145032 - 31145115
Alignment:
Q  21 ataaacaccttgagtatatatggttgaacttgatttggccctctagatgagaatgaagccataactggagctggctttcttcca 104  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31145032 ataaacaccttgagtatatatggttgaactttatttggtcctctagatgagaatgaagccataactggagctggctttcttcca 31145115  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 31049960 - 31050041
Alignment:
Q  21 ataaacaccttgagtatatatggttgaacttgatttggccctctagatgagaatgaagccataactggagctggctttcttc 102  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  31049960 ataaacaccttgagtatatatggctgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttc 31050041  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 31202774 - 31202680
Alignment:
Q  25 acaccttgagtatatatggttgaacttgatttggccctctagatgagaatgaagccataactggagctggctttcttccaaagagtgttattgct 119  Q
    |||||||||||||  |||| |||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||    
T  31202774 acaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccattactggagctggctttcttccatagagtgtttttgct 31202680  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 31107452 - 31107533
Alignment:
Q  21 ataaacaccttgagtatatatggttgaacttgatttggccctctagatgagaatgaagccataactggagctggctttcttc 102  Q
    |||||||||||||||||  |||||||||||| |||||| |||||||| ||| | ||||||||||||||||||||||||||||    
T  31107452 ataaacaccttgagtattgatggttgaactttatttggtcctctagaagagtaggaagccataactggagctggctttcttc 31107533  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 446
Target Start/End: Original strand, 31050245 - 31050319
Alignment:
Q  372 agtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgattttccaaaaacattccctt 446  Q
    |||||||||||||| || |||||  |||||||| |||||| ||| |||||||||||||  ||||| |||||||||    
T  31050245 agtagacaaaacattagactcagcgagaagtgttttcccattaaattttggttgatttctcaaaatcattccctt 31050319  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 31107772 - 31107829
Alignment:
Q  372 agtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgattt 429  Q
    ||||||||||||||||||||| ||||||||||| || ||| ||| ||  |||||||||    
T  31107772 agtagacaaaacatgaggctctgaaagaagtgtttttccattaatttcaggttgattt 31107829  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 31145373 - 31145430
Alignment:
Q  372 agtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgattt 429  Q
    |||||||| |||||||||||||| ||||||||| || |||  ||||| ||||||||||    
T  31145373 agtagacacaacatgaggctcagcaagaagtgtttttccatcaacttctggttgattt 31145430  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 31163197 - 31163254
Alignment:
Q  372 agtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgattt 429  Q
    |||||||| |||||||||||||| ||||||||| || |||  ||||| ||||||||||    
T  31163197 agtagacacaacatgaggctcagcaagaagtgtttttccatcaacttctggttgattt 31163254  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 31914295 - 31914218
Alignment:
Q  372 agtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgattttccaaaaacattccctttgc 449  Q
    ||||||||||||||||||||| ||||||||||| || ||| |||  |  ||||||||| |||||| || |||||||||    
T  31914295 agtagacaaaacatgaggctctgaaagaagtgtttttccattaatctcaggttgatttcccaaaatcactccctttgc 31914218  T

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