View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11993_high_10 (Length: 274)
Name: NF11993_high_10
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11993_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 31704873 - 31704714
Alignment:
| Q |
99 |
tatttgtgaatgatcgtgtaggtcaaaagacaaacttatacatgtgttgtgtgaatcttatgaagtttatgtataggatatttttgtctcctattctgaa |
198 |
Q |
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| T |
31704873 |
tatttgtgaatgatcgtgtaggtcaaaagacaaacttatacatgtgttgtgtgaatcttatgaagtttatgtataagatatttttgtctcctattctgaa |
31704774 |
T |
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| Q |
199 |
ttacatggaaattttgtgtgcgtataaatgtttgatgtttgctacagatgttgccagaag |
258 |
Q |
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| T |
31704773 |
ttacatggaaaatttgtgtacgtataaatgtttgatgtttgctgcagatgttgccagaag |
31704714 |
T |
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Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31705018 - 31704915
Alignment:
| Q |
1 |
aagccgagtaaagtaatttgtcaaatgaatttgaaaagctttgaggtaagaccaattattactactaaattttaaagataatgaacgagttatgtgttta |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31705018 |
aagccgagtaaagtaatttgtcaagtgaatttgaaaagctttgaggtaagaccaattattactactaaattttaaagataatgaacgagttatgtgtttg |
31704919 |
T |
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| Q |
101 |
tttg |
104 |
Q |
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|||| |
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| T |
31704918 |
tttg |
31704915 |
T |
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