View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11993_high_13 (Length: 247)
Name: NF11993_high_13
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11993_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 42009968 - 42010198
Alignment:
| Q |
1 |
attcttgatcagatcagagacttatctgaaaggaataatactgctcacgcttcaacgactgaatccggtgctagaattactatctcgagggaggaatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42009968 |
attcttgatcagatcagagacttatctgaaaggaataatactgctcacgcttcaacgactgaatccggtgctagaattaccatctcgagggaggaatatg |
42010067 |
T |
|
| Q |
101 |
agtccttaaaccgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcgacagcacatattgaagctgcaaagctcagtgaaaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010068 |
agtccttaaaccgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcgacagcacatattgaagctgcaaagctcagtgaaaatga |
42010167 |
T |
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| Q |
201 |
ggctctcataaagttagaggcaactcagatg |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42010168 |
ggctctcataaagttagaggcaactcagatg |
42010198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1245306 - 1245536
Alignment:
| Q |
1 |
attcttgatcagatcagagacttatctgaaaggaataatactgctcacgcttcaacgactgaatccggtgctagaattactatctcgagggaggaatatg |
100 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245306 |
attcatgatcagatcagagacttatccgaaaggaataatactgctcacgcttcaacgactgaatccggtgctagaattactatctcgagggaggaatatg |
1245405 |
T |
|
| Q |
101 |
agtccttaaaccgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcgacagcacatattgaagctgcaaagctcagtgaaaatga |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245406 |
agtccttaaactgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcgacagcacatattgaagctgcaaagctcagtgaaaatga |
1245505 |
T |
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| Q |
201 |
ggctctcataaagttagaggcaactcagatg |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1245506 |
ggctctcataaagttagaggcaactcagatg |
1245536 |
T |
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