View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11993_high_8 (Length: 295)

Name: NF11993_high_8
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11993_high_8
NF11993_high_8
[»] chr4 (2 HSPs)
chr4 (20-288)||(8239936-8240204)
chr4 (20-288)||(15806282-15806535)
[»] chr2 (4 HSPs)
chr2 (23-268)||(1486097-1486342)
chr2 (198-273)||(7817207-7817282)
chr2 (196-234)||(3777860-3777898)
chr2 (196-234)||(19266713-19266751)
[»] chr7 (1 HSPs)
chr7 (76-264)||(23907344-23907532)
[»] chr1 (1 HSPs)
chr1 (197-258)||(50235354-50235415)
[»] chr3 (1 HSPs)
chr3 (197-267)||(3084282-3084352)
[»] chr6 (3 HSPs)
chr6 (196-268)||(34602890-34602962)
chr6 (196-268)||(34724167-34724239)
chr6 (197-267)||(21403873-21403943)
[»] chr5 (1 HSPs)
chr5 (197-267)||(7818437-7818507)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 8240204 - 8239936
Alignment:
Q  20 ctatacaccatccttccaacggatatagcagaaatcattaacaatactcatttcaattttaatgcttccatagatgatgcttatatttggcctcacaata 119  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8240204 ctatacaccatccttccaacggacatagcagaagtcattaacaatactcatctcaattttaatgcttccataggtgatgcttatatttggcctcacaata 8240105  T
Q  120 gcaacaatgtttacactgcaaagagcgaatacagttggattttatcacaaacagaaatcgtaaactttaataatagttcttggtcttggatttggagatt 219  Q
    |||||  |||||||||||||||||||| ||||||||||||| |||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  8240104 gcaacggtgtttacactgcaaagagcggatacagttggattctatcacaaacagaaactgtaaactataataatagttcttggtcttggatttggagatt 8240005  T
Q  220 gaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacactgttcccacttcatctct 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  8240004 gaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacgctgttcccactttatctct 8239936  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 15806535 - 15806282
Alignment:
Q  20 ctatacaccatccttccaacggatatagcagaaatcattaacaatactcatttcaattttaatgcttccatagatgatgcttatatttggcctcacaata 119  Q
    |||||||| || |||||| | |||||||||||| ||||||||||||||||| |||||||||||||||               |||||||| |||||||||    
T  15806535 ctatacactattcttccatcagatatagcagaagtcattaacaatactcatctcaattttaatgctt---------------atatttggtctcacaata 15806451  T
Q  120 gcaacaatgtttacactgcaaagagcgaatacagttggattttatcacaaacagaaatcgtaaactttaataatagttcttggtcttggatttggagatt 219  Q
    |||||  |||||||||| |||||| | |||||| |||||||||||| |||||| || | ||||||| ||||  ||||| ||||||||| ||||||||| |    
T  15806450 gcaacgttgtttacactacaaagaacaaatacaattggattttatctcaaacataacttgtaaactataatgctagtttttggtcttgaatttggagaat 15806351  T
Q  220 gaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacactgttcccacttcatctct 288  Q
    ||||||||| ||||||||||||||  ||||||||||| ||| ||||||| |||||||||||| ||||||    
T  15806350 gaaaattccggaaaaatacaagttcattctttggctttcttatcacaacgctgttcccactttatctct 15806282  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 1486342 - 1486097
Alignment:
Q  23 tacaccatccttccaacggatatagcagaaatcattaacaatactcatttcaattttaatgcttccatagatgatgcttatatttggcctcacaatagca 122  Q
    ||||||||||| ||||| |||||||| ||| |||| ||||| |||  | ||| |||||| |||||||||||||||||||||||||||||||| |||| ||    
T  1486342 tacaccatcctcccaacagatatagctgaagtcatcaacaacacttgtctcacttttaacgcttccatagatgatgcttatatttggcctcataataaca 1486243  T
Q  123 acaatgtttacactgcaaagagcgaatacagttggattttatcacaaacagaaatcgtaaactttaataatagttcttggtcttggatttggagattgaa 222  Q
        ||||||| || | || || | ||||| |||||||||||||||||||||||  |  |||| ||| || |   ||| | |||||||||||||||| ||    
T  1486242 gtggtgtttactctacgaatagtggatacaattggattttatcacaaacagaaaatgagaactataacaacacaacttcggcttggatttggagattaaa 1486143  T
Q  223 aattccagaaaaatacaagttttttctttggcttgcttgtcacaac 268  Q
    | |||| ||||||| ||| |||||| | ||||||||||||||||||    
T  1486142 agttccggaaaaattcaatttttttgtctggcttgcttgtcacaac 1486097  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 7817207 - 7817282
Alignment:
Q  198 cttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacactgt 273  Q
    ||||| |||||||||||||||| ||| |||| ||||||| |||||||||| | |||||||||||||||||| ||||    
T  7817207 cttgggcttggatttggagattaaaagttccggaaaaattcaagttttttgtctggcttgcttgtcacaacgctgt 7817282  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 3777898 - 3777860
Alignment:
Q  196 ttcttggtcttggatttggagattgaaaattccagaaaa 234  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  3777898 ttcttggtcttggatatggagattaaaaattccagaaaa 3777860  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 19266713 - 19266751
Alignment:
Q  196 ttcttggtcttggatttggagattgaaaattccagaaaa 234  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  19266713 ttcttggtcttggatatggagattaaaaattccagaaaa 19266751  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 264
Target Start/End: Complemental strand, 23907532 - 23907344
Alignment:
Q  76 ttttaatgcttccatagatgatgcttatatttggcctcacaatagcaacaatgtttacactgcaaagagcgaatacagttggattttatcacaaacagaa 175  Q
    |||||| ||||||||| |||||||||||||||||||||| |||| ||    ||||||| || | ||||| | ||||| |||||| |||||||||||||||    
T  23907532 ttttaacgcttccatatatgatgcttatatttggcctcataataacagtggtgtttactctacgaagagtggatacaattggatgttatcacaaacagaa 23907433  T
Q  176 atcgtaaactttaataatagttcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtca 264  Q
    |  |  |||| ||| || |   ||||| |||||||||||||||| ||| |||  |||||||||||||||||| | ||||||||||||||    
T  23907432 aatgagaactataacaacacaacttgggcttggatttggagattaaaagttctggaaaaatacaagttttttgtctggcttgcttgtca 23907344  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 50235415 - 50235354
Alignment:
Q  197 tcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgc 258  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  || ||||||||||    
T  50235415 tcttggtcttggatttggagattgaaaattccagagaaatacaagttacttatttggcttgc 50235354  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 3084352 - 3084282
Alignment:
Q  197 tcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaa 267  Q
    |||||||||||||||||| |  | ||||||| ||||||||||||||||||| ||||| | |||||||||||    
T  3084352 tcttggtcttggatttggcgcctaaaaattcaagaaaaatacaagttttttatttggttagcttgtcacaa 3084282  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 34602890 - 34602962
Alignment:
Q  196 ttcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaac 268  Q
    ||||||||| |||||||||||| | |||||||| ||||||| |||||||||  | |||||||| |||||||||    
T  34602890 ttcttggtcctggatttggagacttaaaattcctgaaaaattcaagtttttcatctggcttgcctgtcacaac 34602962  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 34724167 - 34724239
Alignment:
Q  196 ttcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaac 268  Q
    ||||||||| |||||||||||| | |||||||| ||||||| |||||||||  | |||||||| |||||||||    
T  34724167 ttcttggtcctggatttggagacttaaaattcctgaaaaattcaagtttttcatctggcttgcctgtcacaac 34724239  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 21403873 - 21403943
Alignment:
Q  197 tcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaa 267  Q
    |||||||||||||||||| |  ||||| |||| ||||||||||||||| |  |||||||||| ||||||||    
T  21403873 tcttggtcttggatttggcgtctgaaagttcctgaaaaatacaagtttctaatttggcttgcctgtcacaa 21403943  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 7818437 - 7818507
Alignment:
Q  197 tcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaa 267  Q
    |||||||||||||| ||||||||||| | ||| ||||||| |||| |  || |||||||||| ||||||||    
T  7818437 tcttggtcttggatatggagattgaagagtcctgaaaaattcaagctgcttatttggcttgcgtgtcacaa 7818507  T

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