View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11993_low_1 (Length: 982)
Name: NF11993_low_1
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11993_low_1 |
 | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 926; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 926; E-Value: 0
Query Start/End: Original strand, 21 - 967
Target Start/End: Original strand, 37842441 - 37843389
Alignment:
| Q |
21 |
aatggattgacaggtggcattcctgtagaaattcagaaactaaaaatgctgcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcac |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37842441 |
aatggattgataggtggcattcctgtagaaattcagaaactaaaaatgctgcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcac |
37842540 |
T |
|
| Q |
121 |
ttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37842541 |
ttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatc |
37842640 |
T |
|
| Q |
221 |
atcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatgt--ctccaaatcaaccgatcacaaaggt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37842641 |
atcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatgtgtctccaaatcaaccgatcacaaaggt |
37842740 |
T |
|
| Q |
319 |
atcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataattagaaggcgtttccttagaaaggaat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37842741 |
atcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataattcaaaggcgtttccttagaaaggaat |
37842840 |
T |
|
| Q |
419 |
cagatacggaagatctaaagcaatggtatattggtaggggagctggattgattggaaccagatatgcttacgaattcaacgtatcaggtgaagataaacc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37842841 |
cagatacggaagatctaaagcaatggtatattggtaggggagctggattgattggaaccagatatgcttacgaattcaacgtatcaggtgaagataaacc |
37842940 |
T |
|
| Q |
519 |
acctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgctt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37842941 |
acctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgctt |
37843040 |
T |
|
| Q |
619 |
ggtcaacaggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtata |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37843041 |
ggtcaacaggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtata |
37843140 |
T |
|
| Q |
719 |
agcatcgaaacgtgatcaaatacgctgactactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatatttt |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37843141 |
agcatcgaaacgtgatcaaatacgctgactactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatatttt |
37843240 |
T |
|
| Q |
819 |
gcatgagaagaaacctccaccactctttacgtggagtgaccggcttaagattgttgttggaattgctgaaggactagcatatctgcataatgattgtgac |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37843241 |
gcatgagaagaaacctccaccactctttacgtggagtgaccggcttaagattgttgttggaattgctgaaggactagcatatctgcataatgattgtgac |
37843340 |
T |
|
| Q |
919 |
acaccgatagtgcaccgagacattaaaccaaaaaatattcttattgatg |
967 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37843341 |
acaccgatagtgcaccgagacattaaaccaaaaaatattcttattgatg |
37843389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 67 - 390
Target Start/End: Original strand, 37836868 - 37837193
Alignment:
| Q |
67 |
tgctgcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcacttggaagtcttgtttcattaattgaggtcaatatttctcacaatct |
166 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| || ||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37836868 |
tgctgcaaagtctagatatatccttaaacaatttaacaggaagcatagatgctcttggaggtcttgtttcattaattgaggtcaatatttctttcaatct |
37836967 |
T |
|
| Q |
167 |
cttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgc |
266 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| | |||| |
|
|
| T |
37836968 |
cttcaatggatctgtaccaacaggtctaatgaggttattgaattcctcaccatcatcattcatgggtaatcctttcctatgtgtaagttgtttgaattgc |
37837067 |
T |
|
| Q |
267 |
attaaaactagttatgtaaatcca--tgtctccaaatcaaccgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatat |
364 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| ||||||||| ||||| |||||||||||| ||||||||||||| ||||| | | |||||||||| |||| |
|
|
| T |
37837068 |
attataactagtaatgtaaatccatgtgtctacaaatcaactgatcataaaggtatcagttatgttcaaattgtaatgatagtacttggatcctcaatat |
37837167 |
T |
|
| Q |
365 |
tgatttctgttgtgctggtaataata |
390 |
Q |
| |
|
||||||||| |||| |||| |||||| |
|
|
| T |
37837168 |
tgatttctgctgtgatggtgataata |
37837193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 373
Target Start/End: Original strand, 37831118 - 37831472
Alignment:
| Q |
21 |
aatggattgacaggtggcattcctgtagaaattcagaaactaaaaatgctgcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcac |
120 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||| ||| ||| | |||||||||||||||||||||||||||||||||| || ||||||||| | || | |
|
|
| T |
37831118 |
aatggattaacaggcagcattccttcagaaattgggaagctaggactgctgcaaagtctggatatatccttgaacaatttaacaggaagcatatatgctc |
37831217 |
T |
|
| Q |
121 |
ttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatc |
220 |
Q |
| |
|
||| |||||||||||| |||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37831218 |
ttgaaagtcttgtttcgttaactgatatcaatgtttcttacaatctcttcaatggttctgtaccaacaggtctaatgaagttactgaattcctcaccatc |
37831317 |
T |
|
| Q |
221 |
atcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatcca--tgtctccaaatcaaccgatcacaaaggt |
318 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
37831318 |
atcattcatgggtagtcctctcctatgtgttagttgtttgagttgcattgaaactagttatgtaaatccatgtgtctacaagtcaactgatcacaaaggt |
37831417 |
T |
|
| Q |
319 |
atcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctg |
373 |
Q |
| |
|
||| ||||||||||||||||| |||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
37831418 |
atcggtaatgttcaaattgtgttgatagaacttggatcctcaatatttatttctg |
37831472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 525 - 967
Target Start/End: Original strand, 37844814 - 37845256
Alignment:
| Q |
525 |
ccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaa |
624 |
Q |
| |
|
||||||| | ||||| ||| |||||||||||||||||| |||||| ||||||||||| || ||||||||| ||| ||||||||||| | | ||||||||| |
|
|
| T |
37844814 |
ccttcaggacctagttttggaggctacagagaacctaaatgatcactatattattggcaggggagcacattgtagtgtgtacaaagttatacttggtcaa |
37844913 |
T |
|
| Q |
625 |
caggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatc |
724 |
Q |
| |
|
|| | || |||| |||||||||||||||| ||| |||| || || ||| || | |||| ||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
37844914 |
caagcttttgctttaaagaagtttgaatttggaaggaacaataaaatgcaactaagtgtcatgttcaatgaaattgaagtccttgcaatgtttaagcatc |
37845013 |
T |
|
| Q |
725 |
gaaacgtgatcaaatacgctgactactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatga |
824 |
Q |
| |
|
||| |||| |||||||| |||||||||||||| ||| |||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37845014 |
aaaatttgatgaaatacgcacactactggattggaggggattatggtttagtcttatataaattcatggaaaatggaagccttcatgatattttgcatga |
37845113 |
T |
|
| Q |
825 |
gaagaaacctccaccactctttacgtggagtgaccggcttaagattgttgttggaattgctgaaggactagcatatctgcataatgattgtgacacaccg |
924 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||| |||| |||||||| || ||||| | |||| |
|
|
| T |
37845114 |
gaagaaacccccaccaccctttatatggagtgaccggcttaagattgctgttggaattgctcaaggattagcgcatctgcattattattgtatcccaccc |
37845213 |
T |
|
| Q |
925 |
atagtgcaccgagacattaaaccaaaaaatattcttattgatg |
967 |
Q |
| |
|
|||||||||| |||||| |||||||| || || ||| |||||| |
|
|
| T |
37845214 |
atagtgcacctagacatcaaaccaaataacatacttcttgatg |
37845256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 128 - 393
Target Start/End: Original strand, 28089418 - 28089684
Alignment:
| Q |
128 |
tcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28089418 |
tcttgtttcattaattgaggtcaatatttcttacaatctcttcaatggttttgtaccattagctctaatgagtttattgaattcctcaccatcatcattc |
28089517 |
T |
|
| Q |
228 |
atgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatcca--tgtctccaaatcaaccgatcacaaaggtatcagta |
325 |
Q |
| |
|
||||| ||||||||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||| ||| |
|
|
| T |
28089518 |
atgggcaatcctctcatatgttttagttgttgaa-ttgcattaaaactagttatgtaaatccatgtgtctacaaatcaaccgatcataaagttatcggta |
28089616 |
T |
|
| Q |
326 |
atgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataatt |
393 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
28089617 |
atgttcaaattgtgatgatagaacttggatcctcaatattgatttctgatgtgctggtgataataatt |
28089684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 520 - 950
Target Start/End: Original strand, 37850657 - 37851087
Alignment:
| Q |
520 |
cctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttg |
619 |
Q |
| |
|
||||||||||| || | ||||||| ||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| | || |
|
|
| T |
37850657 |
cctgaccttcataagcaagtgttggaggctactgagaacctaaatgatcggtatattattggtggaggagcacatggtattgtgtacaaagctataattt |
37850756 |
T |
|
| Q |
620 |
gtcaacaggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataa |
719 |
Q |
| |
|
|| || |||| ||||||||||||| ||||||||| | | |||| | |||||||||| |||| | | |||| ||| ||||||| || || |||| ||| |
|
|
| T |
37850757 |
gtgaaactgtttgtgctgtaaagaaggttgaattcagacggaacaagcaaaagcggctaagtatcacgcgcaacgaagttgaagtcctagggatgtttaa |
37850856 |
T |
|
| Q |
720 |
gcatcgaaacgtgatcaaatacgctgactactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttg |
819 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
37850857 |
gcatcgaaatttaatcaaatgtttggactactggattggaaatgactatggtttaatcttatatgaattcatggaaaatggaagccttcatgatatcttg |
37850956 |
T |
|
| Q |
820 |
catgagaagaaacctccaccactctttacgtggagtgaccggcttaagattgttgttggaattgctgaaggactagcatatctgcataatgattgtgaca |
919 |
Q |
| |
|
||||| |||||||||||||||| || |||||| || ||| ||| || | || ||||||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
37850957 |
catgaaaagaaacctccaccaccattaacgtgggatgtgcggtgtaaaatagcagtcggaattgctcaaggactattgtatctgcattatgattgtgttc |
37851056 |
T |
|
| Q |
920 |
caccgatagtgcaccgagacattaaaccaaa |
950 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |
|
|
| T |
37851057 |
caccaatagtgcaccgagacatcaaaccaaa |
37851087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 537 - 959
Target Start/End: Original strand, 37831843 - 37832265
Alignment:
| Q |
537 |
agtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatgct |
636 |
Q |
| |
|
||||||||||||||| |||||||||| | | ||||| ||||| | |||| |||||||| |||||||||||| | ||||||| || |||| |||| |
|
|
| T |
37831843 |
agtgttgcaggctactgagaacctaaatcaatgttatatcattggcaagggaggacatggtactgtgtacaaagccataattggtcagcatgtttttgct |
37831942 |
T |
|
| Q |
637 |
gtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatcgaaacgtgatca |
736 |
Q |
| |
|
||||||||| | ||||| | |||| | |||||||||| |||| || |||| ||||||||||| ||||| |||| |||||||||||| |||||| |
|
|
| T |
37831943 |
gtaaagaaggtcgaatttgggtggaacaagaaaaagcggctaagtatcatacgcaacgaaattgaagtccttgggatgtttaagcatcgaaatttgatca |
37832042 |
T |
|
| Q |
737 |
aatacgctgactactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaaacctcc |
836 |
Q |
| |
|
|| |||| ||||||||||||||| |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
37832043 |
aacacgcagactactggattggagaggaatatggtttagtcttatatgaattcatggaaaatggaagccttcatgatattttgcatgaaaagaaaccccc |
37832142 |
T |
|
| Q |
837 |
accactctttacgtggagtgaccggcttaagattgttgttggaattgctgaaggactagcatatctgcataatgattgtgacacaccgatagtgcaccga |
936 |
Q |
| |
|
||||| || ||||||| || ||| ||| || | || ||||||||| |||||||||||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
37832143 |
accacgattaacgtggaatgttcggtgtaaaatagcagtcggaattgctcaaggactagcatatctgcattatgattgtgttccaagaatagtgcaccga |
37832242 |
T |
|
| Q |
937 |
gacattaaaccaaaaaatattct |
959 |
Q |
| |
|
||||| |||||||| || ||||| |
|
|
| T |
37832243 |
gacatcaaaccaaagaacattct |
37832265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 70 - 248
Target Start/End: Original strand, 37850250 - 37850428
Alignment:
| Q |
70 |
tgcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcacttggaagtcttgtttcattaattgaggtcaatatttctcacaatctctt |
169 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || ||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37850250 |
tgcaaagtctagatatatccttgaacaatttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctctt |
37850349 |
T |
|
| Q |
170 |
caatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctctcatatgt |
248 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37850350 |
ccatggttctgtaccaaaaggtctaatgaatttattgaattcctcaccatcatcattcatgggtaatcctctcctatgt |
37850428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 535 - 967
Target Start/End: Original strand, 37837332 - 37837764
Alignment:
| Q |
535 |
ctagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatg |
634 |
Q |
| |
|
||||| ||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | || | | |||| || || |
|
|
| T |
37837332 |
ctagttttggaggctacagagaacctaaatgatcagtatattattggaagaggagcacatggtattgtgtacaaagccataattaatgagcaggcttgtg |
37837431 |
T |
|
| Q |
635 |
ctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatcgaaacgtgat |
734 |
Q |
| |
|
||||||||||||||||||| | |||||| |||| ||| | |||| ||| ||| ||||||||||| ||| | || ||||| ||| |||| |
|
|
| T |
37837432 |
ctgtaaagaagtttgaatttggattgaacaggcaaaagtggcgaagtatcatggacaacgaaattgaagtccttaggggccttaggcatcaaaatttgat |
37837531 |
T |
|
| Q |
735 |
caaatacgctgactactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaaacct |
834 |
Q |
| |
|
||||| | ||||||||||||| |||||||||||| || | ||| ||||||| |||||||||||||| |||| ||||||||||| | |||||| |
|
|
| T |
37837532 |
caaatgttggagccactggattggaaatgactatggtttaatcatatataaattcattgaaaatggaagcctttatgaaattttgcatgaaatgaaaccc |
37837631 |
T |
|
| Q |
835 |
ccaccactctttacgtggagtgaccggcttaagattgttgttggaattgctgaaggactagcatatctgcataatgattgtgacacaccgatagtgcacc |
934 |
Q |
| |
|
||||||| ||| | |||||||| ||| |||| || | ||||||||||||| |||||||||| ||||||||| |||||||||| |||| ||| |||||| |
|
|
| T |
37837632 |
ccaccacccttaaggtggagtgttcggtttaatatagctgttggaattgctcaaggactagcttatctgcattatgattgtgatccaccaatactgcacc |
37837731 |
T |
|
| Q |
935 |
gagacattaaaccaaaaaatattcttattgatg |
967 |
Q |
| |
|
||||||| |||||||| || || ||| |||||| |
|
|
| T |
37837732 |
gagacatcaaaccaaagaacatacttgttgatg |
37837764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 538 - 653
Target Start/End: Original strand, 28089823 - 28089938
Alignment:
| Q |
538 |
gtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatgctg |
637 |
Q |
| |
|
|||||| | |||||||||||||||| |||| |||||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
28089823 |
gtgttggaagctacagagaacctaaatgattggtatattgttggcagaggagcacatggtattgtgtacaaagccatgattggtcaacaggtttgtgctg |
28089922 |
T |
|
| Q |
638 |
taaagaagtttgaatt |
653 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
28089923 |
taaagaaagttgaatt |
28089938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 3e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 21 - 393
Target Start/End: Original strand, 36865569 - 36865943
Alignment:
| Q |
21 |
aatggattgacaggtggcattcctgtagaaattcagaaactaaaaatgctgcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcac |
120 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| || ||| | |||||||||| ||||||||||||||||||||||||| ||||||||||| || | |
|
|
| T |
36865569 |
aatggattgacaggtggtattccttcagaaattgggatgctaggactgctgcaaagcttggatatatccttgaacaatttgacaggaagcatagatgctc |
36865668 |
T |
|
| Q |
121 |
ttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatc |
220 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||||| || |
|
|
| T |
36865669 |
ttgaaggtcttgtttcattaattgaggtcaatatttattacaatcttttcaatggttctgtaccaacacgtctaattaggttattgaattcctcaccgtc |
36865768 |
T |
|
| Q |
221 |
atcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatg--tctccaaatcaaccgatcacaaaggt |
318 |
Q |
| |
|
||| |||||||||||||||||| ||||||| || ||||| | |||| |||||||||||| | |||||||||| ||| |||| |||| |||||||||||| |
|
|
| T |
36865769 |
atcgttcatgggtaatcctctcctatgtgttagatgtttgaattgctttaaaactagttttataaatccatgtatctacaaaccaactgatcacaaaggt |
36865868 |
T |
|
| Q |
319 |
atcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataatt |
393 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||||| |||| ||||| |||||| |||| ||| ||||||||| |
|
|
| T |
36865869 |
atcattaatgttcaaattgtgatgatagaacttggaccctcaatatttgtttctggtgtggcggtgataataatt |
36865943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 796 - 949
Target Start/End: Original strand, 36866274 - 36866427
Alignment:
| Q |
796 |
aatggaagccttcatgatattttgcatgagaagaaacctccaccactctttacgtggagtgaccggcttaagattgttgttggaattgctgaaggactag |
895 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||||| ||||||| ||| ||||||| || ||| |||| | | ||||||||||||| ||||||||| |
|
|
| T |
36866274 |
aatggaagcctttacaatattttgcatgaaaagaaacccccaccacccttaacgtggaatgttcggtttaatttagctgttggaattgctcaaggactag |
36866373 |
T |
|
| Q |
896 |
catatctgcataatgattgtgacacaccgatagtgcaccgagacattaaaccaa |
949 |
Q |
| |
|
| ||||||||| ||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
36866374 |
cttatctgcattatgattgtgttccaccaatagtgcaccgagacatcaaaccaa |
36866427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 581
Target Start/End: Original strand, 36866019 - 36866080
Alignment:
| Q |
520 |
cctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattgg |
581 |
Q |
| |
|
||||||||||| | | ||||||| | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
36866019 |
cctgaccttcatgatcaagtgttggaagctacagagaacctaaatgatcaatatattattgg |
36866080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 626 - 818
Target Start/End: Complemental strand, 29250717 - 29250525
Alignment:
| Q |
626 |
aggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatcg |
725 |
Q |
| |
|
|||||| |||| ||||||||||||| | |||||| | | || |||||||||| || ||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
29250717 |
aggtttttgctataaagaagtttgattccacaaggatcgggcagaagcggctacttaagatgtgcaaagaaattgaagcacttggaatgtgtaagcaatt |
29250618 |
T |
|
| Q |
726 |
aaacgtgatcaaatacgctgactactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatatttt |
818 |
Q |
| |
|
|||| |||||||||| || |||| ||||||||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29250617 |
aaacatgatcaaataagcatactaatggattggataggaatatggtttagtcttgtttgaattcatagaaaatggaagccttcatgatatttt |
29250525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 761 - 833
Target Start/End: Complemental strand, 8680212 - 8680140
Alignment:
| Q |
761 |
aggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaaacc |
833 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8680212 |
aggaatatggtttactcttatatgaattcatggaaaatggaagccttcatgatattttgcatgaaaagaaacc |
8680140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 594 - 706
Target Start/End: Complemental strand, 12629949 - 12629837
Alignment:
| Q |
594 |
tggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaat |
693 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||||||||| |||||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||| |
|
|
| T |
12629949 |
tggtattgtttacaaagttttacttggtcaacaggtttttgctgtgaggaactttgatttcacaaggaacaggcagaagctgctatttatgatgtgcaag |
12629850 |
T |
|
| Q |
694 |
gaaattgaagtgc |
706 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
12629849 |
gaaattgatgtgc |
12629837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 594 - 706
Target Start/End: Original strand, 52048 - 52160
Alignment:
| Q |
594 |
tggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaat |
693 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||| |||||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||| |
|
|
| T |
52048 |
tggtattgtgtacaaagttttacttggtcaacaggtttttgctgtgaggaactttgatttcacaaggaacaggcagaagctgctatttatgatgtgcaag |
52147 |
T |
|
| Q |
694 |
gaaattgaagtgc |
706 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
52148 |
gaaattgatgtgc |
52160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 746 - 830
Target Start/End: Original strand, 52183 - 52264
Alignment:
| Q |
746 |
actactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaa |
830 |
Q |
| |
|
|||||||||||||| || ||| |||||||||||| ||| |||||||| ||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
52183 |
actactggattggagagaactgtggtttagtcttttattaattcatggaaa---gaagccttcatgatattttacatgaaaagaa |
52264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 594 - 706
Target Start/End: Complemental strand, 31634317 - 31634205
Alignment:
| Q |
594 |
tggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaat |
693 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||| |||||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||| |
|
|
| T |
31634317 |
tggtattgtgtacaaagttttacttggtcaataggtttttgctgtgaggaactttgatttcacaaggaacaggcagaagctgctatttatgatgtgcaag |
31634218 |
T |
|
| Q |
694 |
gaaattgaagtgc |
706 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
31634217 |
gaaattgatgtgc |
31634205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 754 - 830
Target Start/End: Complemental strand, 31634179 - 31634106
Alignment:
| Q |
754 |
attggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaa |
830 |
Q |
| |
|
|||||| |||| | |||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
31634179 |
attggagaggattgtggtttagtcttgtattaattcatggaaa---gaagccttcatgatattttacatgaaaagaa |
31634106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 596
Target Start/End: Original strand, 45561900 - 45561951
Alignment:
| Q |
545 |
aggctacagagaacctaagtgatcaatatattattggaagaggagcacatgg |
596 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
45561900 |
aggctacatcgaacctaagtgatcggtatattattggaagaggagcccatgg |
45561951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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