View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11993_low_10 (Length: 288)
Name: NF11993_low_10
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11993_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 44017600 - 44017869
Alignment:
| Q |
1 |
ataataaccaaggagtttacatcaattgttatagtgactagtgaggtagctaagcttttcttgatttcaaggcactttgttgaaatttgaaaacctctcc |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44017600 |
ataataaccaaggagtttaaatcaattgttatagtgactagtgaggtagctaagcttttcttgatttcaaggcactttgttgaaatttgaaaacctctcc |
44017699 |
T |
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| Q |
101 |
tctctcttactattattatctaatttaatgatttaaatactgcttaggctatagttttttattcattgatttggctgtattggttgtggtgtacataact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44017700 |
tctctcttactattattatctaatttaatgatttaaatactgcttaggctatagttttttattcattgatttggctgtattggttgtggtgtacataact |
44017799 |
T |
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| Q |
201 |
atttaaatgtaccaaagtggccttcattatttggatcaatagtgatggaggagatgtatgaggcaggaag |
270 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44017800 |
atgtaaatgtaccaaagtggccttcattatttggatcaatagtgatggaggagatctatgaggcaggaag |
44017869 |
T |
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