View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11993_low_12 (Length: 255)

Name: NF11993_low_12
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11993_low_12
NF11993_low_12
[»] chr1 (29 HSPs)
chr1 (106-251)||(1389370-1389515)
chr1 (1-109)||(47541848-47541956)
chr1 (1-106)||(24273084-24273188)
chr1 (3-101)||(26500947-26501045)
chr1 (6-104)||(47165077-47165175)
chr1 (46-106)||(946869-946929)
chr1 (46-106)||(15467486-15467546)
chr1 (54-106)||(35499546-35499598)
chr1 (46-106)||(220642-220702)
chr1 (48-108)||(12293020-12293080)
chr1 (51-111)||(41480949-41481009)
chr1 (46-108)||(28632124-28632186)
chr1 (46-106)||(6470228-6470289)
chr1 (3-44)||(24273226-24273267)
chr1 (48-96)||(10166986-10167034)
chr1 (46-106)||(21267346-21267406)
chr1 (48-108)||(37036502-37036562)
chr1 (48-108)||(37446881-37446941)
chr1 (55-106)||(4663808-4663859)
chr1 (48-107)||(23969438-23969497)
chr1 (46-109)||(31166701-31166764)
chr1 (47-106)||(32128574-32128633)
chr1 (46-108)||(37447424-37447486)
chr1 (46-101)||(41822078-41822133)
chr1 (46-104)||(44571680-44571738)
chr1 (3-41)||(47165221-47165259)
chr1 (70-106)||(21088258-21088294)
chr1 (3-43)||(26501086-26501126)
chr1 (48-108)||(37447969-37448029)
[»] chr3 (29 HSPs)
chr3 (1-106)||(8762231-8762336)
chr3 (1-111)||(19475921-19476031)
chr3 (1-109)||(33871761-33871869)
chr3 (3-108)||(47714385-47714488)
chr3 (3-108)||(54761424-54761529)
chr3 (46-102)||(34396148-34396204)
chr3 (46-113)||(7977040-7977107)
chr3 (46-104)||(28181800-28181858)
chr3 (46-106)||(48948071-48948131)
chr3 (46-109)||(21731408-21731471)
chr3 (55-110)||(52527508-52527563)
chr3 (46-108)||(34089065-34089127)
chr3 (46-108)||(38506482-38506544)
chr3 (46-103)||(48824637-48824694)
chr3 (46-106)||(36397511-36397571)
chr3 (46-106)||(53469951-53470011)
chr3 (45-100)||(28092152-28092206)
chr3 (46-109)||(35279467-35279530)
chr3 (46-108)||(671186-671248)
chr3 (46-108)||(43863484-43863546)
chr3 (58-107)||(21307110-21307159)
chr3 (46-106)||(24241711-24241771)
chr3 (57-100)||(645741-645784)
chr3 (46-86)||(19475736-19475776)
chr3 (46-106)||(50168191-50168251)
chr3 (46-109)||(2105219-2105282)
chr3 (10-43)||(8762159-8762192)
chr3 (3-44)||(19475842-19475883)
chr3 (3-51)||(31189395-31189443)
[»] chr2 (32 HSPs)
chr2 (1-113)||(10480224-10480336)
chr2 (1-109)||(11532111-11532219)
chr2 (1-106)||(11794000-11794105)
chr2 (3-109)||(7684551-7684657)
chr2 (46-109)||(769521-769584)
chr2 (46-108)||(1583330-1583392)
chr2 (46-108)||(2925140-2925202)
chr2 (46-108)||(33188787-33188849)
chr2 (46-108)||(39630715-39630777)
chr2 (46-106)||(8736501-8736561)
chr2 (46-106)||(35047201-35047261)
chr2 (46-109)||(3092735-3092798)
chr2 (46-108)||(7309434-7309496)
chr2 (46-112)||(19231011-19231076)
chr2 (46-104)||(21504939-21504997)
chr2 (48-106)||(32839188-32839246)
chr2 (46-103)||(19193746-19193803)
chr2 (46-107)||(44256123-44256184)
chr2 (46-106)||(8735965-8736025)
chr2 (46-106)||(13018234-13018294)
chr2 (58-114)||(17906143-17906199)
chr2 (48-106)||(14306364-14306422)
chr2 (48-110)||(31703919-31703981)
chr2 (46-109)||(11141794-11141857)
chr2 (46-108)||(19072320-19072382)
chr2 (46-108)||(41585192-41585254)
chr2 (3-44)||(11793921-11793962)
chr2 (48-112)||(7611413-7611477)
chr2 (56-106)||(28021706-28021756)
chr2 (51-100)||(6996371-6996420)
chr2 (3-44)||(10480145-10480186)
chr2 (3-43)||(28740622-28740662)
[»] chr6 (15 HSPs)
chr6 (1-108)||(34364849-34364956)
chr6 (1-106)||(13487380-13487485)
chr6 (3-106)||(34244843-34244946)
chr6 (3-106)||(29889296-29889400)
chr6 (46-107)||(8475618-8475679)
chr6 (46-110)||(1195793-1195857)
chr6 (48-108)||(15615918-15615978)
chr6 (46-106)||(1368965-1369025)
chr6 (48-106)||(10105497-10105555)
chr6 (48-108)||(724809-724869)
chr6 (58-110)||(6357821-6357873)
chr6 (3-44)||(13487301-13487342)
chr6 (48-104)||(31413351-31413407)
chr6 (3-43)||(34244987-34245027)
chr6 (4-44)||(34364770-34364810)
[»] chr5 (36 HSPs)
chr5 (1-108)||(12064316-12064423)
chr5 (8-108)||(25935149-25935248)
chr5 (15-106)||(20320529-20320620)
chr5 (3-104)||(19533769-19533870)
chr5 (1-106)||(37722754-37722859)
chr5 (46-108)||(32249647-32249709)
chr5 (46-106)||(12480389-12480449)
chr5 (9-73)||(37145395-37145458)
chr5 (46-106)||(13390962-13391022)
chr5 (48-114)||(15270409-15270475)
chr5 (46-104)||(28489951-28490009)
chr5 (46-108)||(40089410-40089472)
chr5 (46-108)||(41761742-41761804)
chr5 (46-98)||(38178813-38178865)
chr5 (46-98)||(38206037-38206089)
chr5 (46-109)||(927790-927853)
chr5 (48-106)||(6771823-6771881)
chr5 (46-111)||(15579993-15580059)
chr5 (46-108)||(22304732-22304794)
chr5 (46-103)||(22304672-22304729)
chr5 (46-108)||(28490395-28490458)
chr5 (46-106)||(17541884-17541944)
chr5 (58-109)||(32317175-32317225)
chr5 (48-106)||(35111702-35111760)
chr5 (3-44)||(19533910-19533951)
chr5 (48-105)||(37091078-37091135)
chr5 (73-110)||(37145362-37145399)
chr5 (64-104)||(17492691-17492731)
chr5 (48-108)||(33995442-33995502)
chr5 (46-107)||(8255446-8255507)
chr5 (3-44)||(25935293-25935334)
chr5 (46-115)||(33146570-33146639)
chr5 (3-44)||(37145504-37145545)
chr5 (3-44)||(37722897-37722938)
chr5 (3-44)||(40090417-40090458)
chr5 (65-109)||(41789591-41789634)
[»] chr4 (28 HSPs)
chr4 (1-108)||(10633136-10633243)
chr4 (1-108)||(21012437-21012544)
chr4 (1-106)||(31473954-31474059)
chr4 (41-108)||(3803709-3803776)
chr4 (46-103)||(47108708-47108765)
chr4 (46-106)||(40547768-40547828)
chr4 (46-105)||(27284221-27284280)
chr4 (46-109)||(46242619-46242682)
chr4 (48-106)||(30303610-30303668)
chr4 (46-103)||(42776573-42776630)
chr4 (46-106)||(2126326-2126386)
chr4 (46-106)||(19461266-19461326)
chr4 (46-106)||(35470612-35470672)
chr4 (46-106)||(42775780-42775840)
chr4 (48-106)||(21782463-21782521)
chr4 (46-104)||(31948061-31948119)
chr4 (46-108)||(41139960-41140022)
chr4 (57-103)||(5579654-5579700)
chr4 (46-108)||(28751742-28751804)
chr4 (3-44)||(10633058-10633099)
chr4 (3-44)||(31473875-31473916)
chr4 (54-102)||(16299781-16299829)
chr4 (48-108)||(24705820-24705880)
chr4 (48-108)||(54566664-54566724)
chr4 (46-105)||(56118170-56118229)
chr4 (56-106)||(16516666-16516716)
chr4 (3-44)||(1539667-1539708)
chr4 (46-79)||(26534976-26535009)
[»] chr7 (34 HSPs)
chr7 (1-106)||(26161987-26162091)
chr7 (1-113)||(29639056-29639169)
chr7 (1-105)||(31632826-31632928)
chr7 (3-106)||(6498614-6498717)
chr7 (46-108)||(14602769-14602831)
chr7 (46-106)||(14790557-14790617)
chr7 (46-106)||(43791511-43791571)
chr7 (46-108)||(39342158-39342220)
chr7 (46-111)||(35456294-35456359)
chr7 (48-104)||(38320770-38320825)
chr7 (46-108)||(2411801-2411863)
chr7 (46-108)||(40496208-40496270)
chr7 (46-106)||(23548119-23548179)
chr7 (46-106)||(28538677-28538737)
chr7 (46-106)||(36328328-36328388)
chr7 (46-106)||(42817012-42817072)
chr7 (46-109)||(30587427-30587490)
chr7 (48-106)||(37460470-37460528)
chr7 (48-106)||(45181757-45181814)
chr7 (58-106)||(35488714-35488761)
chr7 (46-106)||(45984823-45984883)
chr7 (46-106)||(45989183-45989243)
chr7 (3-44)||(26162129-26162170)
chr7 (3-44)||(31632748-31632789)
chr7 (3-44)||(35776947-35776988)
chr7 (3-43)||(25189219-25189259)
chr7 (46-106)||(32651013-32651073)
chr7 (48-107)||(40495691-40495750)
chr7 (49-106)||(1580381-1580439)
chr7 (3-53)||(15990917-15990967)
chr7 (2-44)||(43791115-43791157)
chr7 (49-106)||(26416413-26416469)
chr7 (3-43)||(6498758-6498798)
chr7 (46-102)||(30080312-30080368)
[»] chr8 (30 HSPs)
chr8 (1-111)||(23011839-23011949)
chr8 (6-108)||(30444804-30444906)
chr8 (3-104)||(36103208-36103308)
chr8 (46-106)||(29611812-29611872)
chr8 (46-106)||(44346221-44346281)
chr8 (46-105)||(31980047-31980106)
chr8 (46-108)||(14727-14789)
chr8 (46-104)||(13145073-13145131)
chr8 (46-108)||(33376827-33376889)
chr8 (46-100)||(40733641-40733695)
chr8 (46-108)||(43185469-43185531)
chr8 (46-106)||(29256913-29256973)
chr8 (46-106)||(35978592-35978652)
chr8 (3-62)||(515449-515508)
chr8 (46-105)||(10593562-10593620)
chr8 (46-105)||(31976666-31976725)
chr8 (46-104)||(26519984-26520042)
chr8 (46-108)||(33986486-33986548)
chr8 (46-106)||(29482341-29482401)
chr8 (3-44)||(23011760-23011801)
chr8 (17-61)||(21465308-21465352)
chr8 (46-110)||(28190227-28190291)
chr8 (55-106)||(9983146-9983197)
chr8 (9-44)||(13144615-13144650)
chr8 (49-108)||(14013267-14013326)
chr8 (46-108)||(1087844-1087906)
chr8 (48-93)||(7079780-7079825)
chr8 (46-115)||(34009178-34009247)
chr8 (15-51)||(8049292-8049328)
chr8 (3-51)||(13404912-13404960)
[»] scaffold0027 (1 HSPs)
scaffold0027 (3-105)||(11276-11378)
[»] scaffold0169 (1 HSPs)
scaffold0169 (46-108)||(4508-4570)
[»] scaffold0417 (1 HSPs)
scaffold0417 (46-103)||(11499-11556)
[»] scaffold0301 (1 HSPs)
scaffold0301 (46-93)||(7641-7688)
[»] scaffold0129 (1 HSPs)
scaffold0129 (46-87)||(19326-19367)
[»] scaffold0318 (1 HSPs)
scaffold0318 (58-106)||(3358-3406)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 1389515 - 1389370
Alignment:
Q  106 taaaggaattattactatcatcagattcaattgttatatgaagtgtagtttgctcnnnnnnnattattaatattatagtagggtttccttagaaacatca 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  1389515 taaaggaattattactatcatcagattcaattgttatatgaagtgtagtttgctctttttttattattaatattatagtagggtttccttagaaacatca 1389416  T
Q  206 cataaaatttaaaggcttaggatacttgctaactacctttgcttct 251  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  1389415 cataaaatttaaaggcttaggatgcttgctaactacctttgtttct 1389370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 47541956 - 47541848
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  47541956 tgttgaggaaatgtaatattacgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttctaaattacctcatccaaaca 47541857  T
Q  101 cactctaaa 109  Q
    |||||||||    
T  47541856 cactctaaa 47541848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 24273188 - 24273084
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  24273188 tgttaaggaaatgtaatgttacgagggaattcaaatactttgagataa-ttgcgtagaattttaaattctttaaaatttccaaattacctcatccaaaca 24273090  T
Q  101 cactct 106  Q
    ||||||    
T  24273089 cactct 24273084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 26501045 - 26500947
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacac 101  Q
    |||| |||||| ||| |||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26501045 ttgatgaaatgtaatattatgaaggaattcaaatactttgaggtaaattacctagaattttaaattctttaaaattttcaaattacctcatccaaacac 26500947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 47165175 - 47165077
Alignment:
Q  6 aggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    |||||||  |||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47165175 aggaaatataatgttatgaaggaattcaaatactttgaggtaaattacctaaaattttaaattctttaaaattttcaaattacctcatccaaacacact 47165077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 946869 - 946929
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  946869 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 946929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 15467546 - 15467486
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  15467546 taaattgcctagaattctaaattctttaaaatttcttaattacctcatccaaacacactct 15467486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 35499546 - 35499598
Alignment:
Q  54 ctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  35499546 ctagaattctaaattctttaaaattttcaaattacttcatccaaacacactct 35499598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 220642 - 220702
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||||| || ||||||  ||||||||||||||||||||||||    
T  220642 taaattgcctagaattctaaattctctataatttttcaattacctcatccaaacacactct 220702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 12293080 - 12293020
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||| |||||||||| | |||| | ||||||||||||||||||||||||||    
T  12293080 aattgcctagaattctaaattctttgagatttcccaattacctcatccaaacacactctaa 12293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 41481009 - 41480949
Alignment:
Q  51 tgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagg 111  Q
    |||||| |||||||||| ||||||||  || ||||||||||||||||||||||||| ||||    
T  41481009 tgcctaaaattttaaatgctttaaaaaatttaaattacctcatccaaacacactcttaagg 41480949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 28632186 - 28632124
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| |||||| |||| |||||   ||||| ||||||||||||||||||||    
T  28632186 taaattgcctagaattctaaattttttataatttctcaattatctcatccaaacacactctaa 28632124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 6470289 - 6470228
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttc-aaattacctcatccaaacacactct 106  Q
    |||||| ||||||||| |||||||||||||| ||||  |||| |||||||||||||||||||    
T  6470289 taaattacctagaattctaaattctttaaaaatttctcaattgcctcatccaaacacactct 6470228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 24273267 - 24273226
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  24273267 ttgagggaatgtaatgttatgagggaattcaaatactttgag 24273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 10166986 - 10167034
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatcca 96  Q
    ||||||||||||||||||||||||||||||||   |||||||| |||||    
T  10166986 aattgcctagaattttaaattctttaaaatttatcaattaccttatcca 10167034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 21267406 - 21267346
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||||| ||||  ||||||||||||||||   ||||| ||||||||||||||||||    
T  21267406 taaattgcctataattcgaaattctttaaaatttctcaattatctcatccaaacacactct 21267346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 37036562 - 37036502
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||| ||||||||| ||||||||| |||||||   ||||||| ||||||||||||||||||    
T  37036562 aattacctagaattctaaattcttcaaaatttcttaattaccccatccaaacacactctaa 37036502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 37446941 - 37446881
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||| ||||||||| ||||||||| |||||||   ||||||| ||||||||||||||||||    
T  37446941 aattacctagaattataaattcttcaaaatttcttaattaccccatccaaacacactctaa 37446881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 4663808 - 4663859
Alignment:
Q  55 tagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||||||||| |||||||||   |||||||||||||||||| |||||    
T  4663808 tagaattttaaattccttaaaatttgtcaattacctcatccaaacaaactct 4663859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 23969497 - 23969438
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 107  Q
    |||||| || |||||||||||||||||||  ||  ||||||| |||||||||||||||||    
T  23969497 aattgcttataattttaaattctttaaaaaatttcaattaccccatccaaacacactcta 23969438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 31166701 - 31166764
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    ||||||| ||||| || ||||||||||| |||||   |||||||| ||||||||||||||||||    
T  31166701 taaattgactagatttctaaattctttacaatttctcaattacctgatccaaacacactctaaa 31166764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 32128574 - 32128633
Alignment:
Q  47 aaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||| |||| ||||||||||||||||||||||   ||||||||| | ||||||||||||    
T  32128574 aaattacctaaaattttaaattctttaaaatttctcaattacctcgttcaaacacactct 32128633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 37447486 - 37447424
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattt-tcaaattacctcatccaaacacactctaa 108  Q
    |||||| ||||||||| ||||||||| ||||||| |||||| || |||||||||||||||||||    
T  37447486 taaattacctagaattctaaattcttcaaaatttctcaaat-acttcatccaaacacactctaa 37447424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 41822133 - 41822078
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacac 101  Q
    |||||||||||||||| |||||||| ||||||||   |||||| ||||||||||||    
T  41822133 taaattgcctagaattctaaattctgtaaaatttctcaattacttcatccaaacac 41822078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 44571680 - 44571738
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    |||||| ||||| ||| ||||||||||| ||||| | |||||||||||| |||||||||    
T  44571680 taaattacctaggattctaaattctttataatttcccaattacctcatcgaaacacact 44571738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 47165259 - 47165221
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatacttt 41  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  47165259 ttgaggaaatgtaatgttttgagggaattcaaatacttt 47165221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 21088294 - 21088258
Alignment:
Q  70 tttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  21088294 tttaaaattttccaattacctcattcaaacacactct 21088258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 26501126 - 26501086
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttga 43  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  26501126 ttgagggaatgtaatgttttgagggaattcaaatactttga 26501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 37448029 - 37447969
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||| ||||||||| ||||||| | |||||||   ||||||| ||||||||||||||||||    
T  37448029 aattccctagaattctaaattcatcaaaatttctcaattaccccatccaaacacactctaa 37447969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 8762231 - 8762336
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8762231 tgttgagaaaatgtaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 8762330  T
Q  101 cactct 106  Q
    ||||||    
T  8762331 cactct 8762336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 19475921 - 19476031
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19475921 tgttgaggaaatgtaatgttatgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccaaaca 19476020  T
Q  101 cactctaaagg 111  Q
    |||||| ||||    
T  19476021 cactcttaagg 19476031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 33871869 - 33871761
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    |||||||||||   ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  33871869 tgttgaggaaacataatgttacgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccacaca 33871770  T
Q  101 cactctaaa 109  Q
    |||||||||    
T  33871769 cactctaaa 33871761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 47714385 - 47714488
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    ||||||||||| |||||||||| |||||||||||||||  || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  47714385 ttgaggaaatgtaatgttatgaaggaattcaaatactt--aggtaaattgcctagaatttgaaattctttaaaatttccaaattacctcatccaaacaca 47714482  T
Q  103 ctctaa 108  Q
    ||||||    
T  47714483 ctctaa 47714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 54761529 - 54761424
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    ||||||||||| |||||||||| |||||||||||||||| |  ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  54761529 ttgaggaaatgtaatgttatgaaggaattcaaatactttaaagtaaattgtctaaaattttaaattctgtaaaattttcaaattacctcatccaaacaca 54761430  T
Q  103 ctctaa 108  Q
    ||||||    
T  54761429 ctctaa 54761424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 34396204 - 34396148
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  34396204 taaattgcctagaattttaaactctttaaaattttccaattacctcatccaaacaca 34396148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 7977040 - 7977107
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaa 113  Q
    |||||||||||| |||  |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  7977040 taaattgcctaggattcgaaattctttaaaatttcccaattacctcatccaaacacactctaaaggaa 7977107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 28181858 - 28181800
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  28181858 taaattgcctagaattctaaattctttaaaattttccaattacctcgtccaaacacact 28181800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 48948071 - 48948131
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||||||| |||||    
T  48948071 taaattgcctagaattctaaattctttaaaatttttcaattacctcatccaaacatactct 48948131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 21731408 - 21731471
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    ||||||||||||||||||||||||| | ||||||   |||||||||||||||||||||||||||    
T  21731408 taaattgcctagaattttaaattctcttaaatttatcaattacctcatccaaacacactctaaa 21731471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 52527508 - 52527563
Alignment:
Q  55 tagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 110  Q
    ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  52527508 tagaattctaaattttttaaaattttccaattacctcatccaaacacactctaaag 52527563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 34089065 - 34089127
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| |||||||||||||||||   |||||| |||||||||||||||||||    
T  34089065 taaattgcctagaattctaaattctttaaaatttctcaattacatcatccaaacacactctaa 34089127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 38506544 - 38506482
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    ||||||||||| |||| ||||||||||||||||||| |||||| |||| ||||||||||||||    
T  38506544 taaattgcctaaaattctaaattctttaaaattttccaattacttcattcaaacacactctaa 38506482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 48824694 - 48824637
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 103  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||||    
T  48824694 taaattgcctaaaattctaaattctttaaaattttccaattaccttatccaaacacac 48824637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 36397571 - 36397511
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  36397571 taaattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 36397511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 53470011 - 53469951
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  53470011 taaattacctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 53469951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 28092152 - 28092206
Alignment:
Q  45 ataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  28092152 ataaattgcctagaattt-aaattctttaaaattttccaattagctcatccaaaca 28092206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 35279530 - 35279467
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    |||||| | ||||||| ||||||||||||||||| | |||| ||||||||||||||||||||||    
T  35279530 taaattacttagaattctaaattctttaaaatttcccaattgcctcatccaaacacactctaaa 35279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 671248 - 671186
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    ||||||| ||| ||||||| ||||||||||||||   ||||||||||||||||||||||||||    
T  671248 taaattgtctataattttatattctttaaaatttctcaattacctcatccaaacacactctaa 671186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 43863546 - 43863484
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||| ||||||||||||||||    
T  43863546 taaattacctagaattctaaattctttaaaatttctcaattacctcgtccaaacacactctaa 43863484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 21307159 - 21307110
Alignment:
Q  58 aattttaaattctttaaaattttcaaattacctcatccaaacacactcta 107  Q
    |||| ||||||||||||||||| | |||||||||||||||||||||||||    
T  21307159 aattctaaattctttaaaatttcccaattacctcatccaaacacactcta 21307110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 24241771 - 24241711
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||| |||| ||| |||||||||||||||||   ||||||||||||||||||||||||    
T  24241771 taaattgtctaggattctaaattctttaaaatttctcaattacctcatccaaacacactct 24241711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 645784 - 645741
Alignment:
Q  57 gaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||    
T  645784 gaattctaaattctttaaaattttccaattacctcatccaaaca 645741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 19475736 - 19475776
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaatt 86  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  19475736 taaatagcctagaattttaaattctttaaaatttccaaatt 19475776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 50168251 - 50168191
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||| |||||| |  ||||||||||||||   ||||||||||||||||||||||||    
T  50168251 taaattgccaagaattctcgattctttaaaatttctcaattacctcatccaaacacactct 50168191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 2105219 - 2105282
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    |||||| ||||||||| ||||||||| |||||||   ||||||  |||||||||||||||||||    
T  2105219 taaattacctagaattataaattcttcaaaatttctcaattactccatccaaacacactctaaa 2105282  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 8762159 - 8762192
Alignment:
Q  10 aatgcaatgttatgagggaattcaaatactttga 43  Q
    |||| |||||||||||||||||||||||||||||    
T  8762159 aatgtaatgttatgagggaattcaaatactttga 8762192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 19475842 - 19475883
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| |||||||||||| |||||||||||||||||    
T  19475842 ttgagggaatgtaatgttatgaggtaattcaaatactttgag 19475883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 31189443 - 31189395
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaatt 51  Q
    |||||| |||| |||||| |||| |||||||||||||||||| ||||||    
T  31189443 ttgaggtaatgtaatgttttgagagaattcaaatactttgaggtaaatt 31189395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 10480224 - 10480336
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10480224 tgttgaggaaatgtaatgctatgagagaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaattttcaaattacctcatccaagca 10480323  T
Q  101 cactctaaaggaa 113  Q
    |||||||||||||    
T  10480324 cactctaaaggaa 10480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 11532219 - 11532111
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||||||||    
T  11532219 tgttgaggaaatgtaatgttatgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaacttccaaattatctcatccaaaca 11532120  T
Q  101 cactctaaa 109  Q
    || ||||||    
T  11532119 cattctaaa 11532111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 11794000 - 11794105
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||| ||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  11794000 tgttgagaaaatgtaatgttatgagagaattcaaatactttgaggtaaattgtctagaattttaaattctttaaaattttcaaattacctaatccaaaca 11794099  T
Q  101 cactct 106  Q
    ||||||    
T  11794100 cactct 11794105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 7684551 - 7684657
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    ||||||||||| ||||||||||  |||||||||||||||||  ||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  7684551 ttgaggaaatgtaatgttatgaaagaattcaaatactttgaagtaaatggcctaaaattttaaattctttaaaatttttaaattaccttatccaaacaca 7684650  T
Q  103 ctctaaa 109  Q
    |||||||    
T  7684651 ctctaaa 7684657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 769521 - 769584
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||    
T  769521 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaaa 769584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 1583392 - 1583330
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  1583392 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 1583330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 2925140 - 2925202
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||    
T  2925140 taaattgcctagaattctaaattctttaaaatttcccaattacttcatccaaacacactctaa 2925202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 33188849 - 33188787
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  33188849 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 33188787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 39630715 - 39630777
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    ||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||    
T  39630715 taaattgcctagaattttaaattttttaaaatttctcaattacctcatccaaacacactctaa 39630777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 8736501 - 8736561
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  8736501 taaattgggtagaattttaaattctttaaaattttcaaataacctcatccaaatacactct 8736561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 35047261 - 35047201
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||    
T  35047261 taaattgcctagaattttaaattctttaaaatttctcaattaccccatccaaacacactct 35047201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 3092735 - 3092798
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    |||||| ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||    
T  3092735 taaatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaaa 3092798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 7309496 - 7309434
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||| ||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  7309496 taaattgcttagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 7309434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 19231076 - 19231011
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagga 112  Q
    |||||||||||||||| ||| |||||||||||||   ||||||||||||||||||||||||||||||    
T  19231076 taaattgcctagaattctaa-ttctttaaaatttctcaattacctcatccaaacacactctaaagga 19231011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 21504939 - 21504997
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    |||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  21504939 taaattgcttagaattctaaattctttaaaatttcccaattacctcatccaaacacact 21504997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 32839246 - 32839188
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||    
T  32839246 aattgcctagaattttaaattctttaaaatttctcaattacctcatctaaacacactct 32839188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 19193803 - 19193746
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 103  Q
    ||||||||||| |||||||| || |||||||||||| |||||||||||||||||||||    
T  19193803 taaattgcctaaaattttaatttttttaaaattttccaattacctcatccaaacacac 19193746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 44256123 - 44256184
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 107  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||| ||||||    
T  44256123 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacatactcta 44256184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 8736025 - 8735965
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||| ||| ||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  8736025 taaattgcttaggattctaaattctttaaaatttcccaattacctcatccaaacacactct 8735965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 13018234 - 13018294
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||| ||||||||||||||||||||| |||||   ||||||||||||||||||||||||    
T  13018234 taaattacctagaattttaaattctttataatttctcaattacctcatccaaacacactct 13018294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 17906143 - 17906199
Alignment:
Q  58 aattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaat 114  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||    
T  17906143 aattttaaattctttataatttttcaattacctcatccaaacacactctaagggaat 17906199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 14306422 - 14306364
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  14306422 aattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 14306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 31703981 - 31703919
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 110  Q
    ||||| |||||||| |||||| | |||||||||| ||||||||||| ||||||||||||||||    
T  31703981 aattgactagaattctaaattatctaaaattttccaattacctcattcaaacacactctaaag 31703919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 11141794 - 11141857
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    ||||||| |||| ||| |||||||||||||||||   |||||||||||||||||||||| ||||    
T  11141794 taaattgtctaggattctaaattctttaaaatttctcaattacctcatccaaacacactttaaa 11141857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 19072320 - 19072382
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||| ||||| ||| |||||||||||||||||   ||||| ||||||||||||||||||||    
T  19072320 taaattacctaggattctaaattctttaaaatttctcaattatctcatccaaacacactctaa 19072382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 41585254 - 41585192
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    ||||||| | |||||| |||||||||||||||||   |||||||||||||||| |||||||||    
T  41585254 taaattgtcaagaattctaaattctttaaaatttatcaattacctcatccaaagacactctaa 41585192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 11793921 - 11793962
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  11793921 ttgagggaatgtaatgttatgagggaattcaaatactttgag 11793962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 7611477 - 7611413
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagga 112  Q
    |||| ||||||||||||||||||| |||||||   ||||||  |||||||||||||| |||||||    
T  7611477 aattacctagaattttaaattcttcaaaatttctcaattactccatccaaacacactttaaagga 7611413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 28021756 - 28021706
Alignment:
Q  56 agaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||| |||||||||||||||||   ||||| ||||||||||||||||||    
T  28021756 agaattctaaattctttaaaatttctcaattagctcatccaaacacactct 28021706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 6996420 - 6996371
Alignment:
Q  51 tgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||| |||||||||  ||| |||| ||||||||||||||||||    
T  6996420 tgcctagaattctaaattcttacaaaatttctaattacctcatccaaaca 6996371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 10480145 - 10480186
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||| ||||||||||||||||||||||    
T  10480145 ttgagggaatgtaatgttacgagggaattcaaatactttgag 10480186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 28740622 - 28740662
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttga 43  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  28740622 ttgagggaatgtaatgttttgagggaattcaaatactttga 28740662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34364849 - 34364956
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34364849 tgttgaggaaatataatgctatgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 34364948  T
Q  101 cactctaa 108  Q
    ||||||||    
T  34364949 cactctaa 34364956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 13487380 - 13487485
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  13487380 tgttgaggaaatgtaatattacgagggaattcaaatactttgagataaattgtctagaattttaaattctttaaaatttccaaattacctcatccaaaca 13487479  T
Q  101 cactct 106  Q
    ||||||    
T  13487480 cactct 13487485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 34244946 - 34244843
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    ||||| ||||| ||| |||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34244946 ttgagtaaatgtaatattatgaaggaatttaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacaca 34244847  T
Q  103 ctct 106  Q
    ||||    
T  34244846 ctct 34244843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 29889400 - 29889296
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattcttt-aaaattttcaaattacctcatccaaacac 101  Q
    |||| |||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  29889400 ttgaagaaatgtaatgttatgaaggaattcaaatactttgaggttaattgcctagaattttaaattctttaaaaaatttcaaattacctcatccaaacac 29889301  T
Q  102 actct 106  Q
    |||||    
T  29889300 actct 29889296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 8475618 - 8475679
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 107  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||| ||||||||||||    
T  8475618 taaattgcctagaattctaaattctttaaaatttctcaattacctcatctaaacacactcta 8475679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 1195793 - 1195857
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 110  Q
    ||||||||||||||||| ||||||| ||||||||   ||||||||||| ||||||||||||||||    
T  1195793 taaattgcctagaatttcaaattctctaaaatttctcaattacctcattcaaacacactctaaag 1195857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 15615978 - 15615918
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||  |||||||||||||||||||||   ||||||||||||||||||||||||||    
T  15615978 aattgcctaatattttaaattctttaaaatttatcaattacctcatccaaacacactctaa 15615918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 1368965 - 1369025
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||| ||||||||||||||||||||| |||||   ||||||||| ||||||||||||||    
T  1368965 taaattacctagaattttaaattctttataatttctcaattacctcgtccaaacacactct 1369025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 10105497 - 10105555
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||| || | |||||||||||||||||   ||||||||||||||||||||||||    
T  10105497 aattgcctacaagtctaaattctttaaaatttctcaattacctcatccaaacacactct 10105555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 724869 - 724809
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||| ||||||||| ||||||||| |||| ||   ||||||||||||||||||||||||||    
T  724869 aattacctagaattctaaattcttaaaaaattctcaattacctcatccaaacacactctaa 724809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 6357873 - 6357821
Alignment:
Q  58 aattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 110  Q
    |||| ||||||||| ||||||| | ||||||||| ||||||||||||||||||    
T  6357873 aattctaaattcttcaaaatttcccaattacctcgtccaaacacactctaaag 6357821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 13487301 - 13487342
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| | ||||||||||||||||||||||||||||    
T  13487301 ttgagggaatgtagtgttatgagggaattcaaatactttgag 13487342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 31413351 - 31413407
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    |||| ||||||||| ||||||||| |||||||   ||||||| ||||||||||||||    
T  31413351 aattccctagaattctaaattcttcaaaatttctcaattaccccatccaaacacact 31413407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 34245027 - 34244987
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttga 43  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  34245027 ttgagggaatgtaatgttttgagggaattcaaatactttga 34244987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 34364770 - 34364810
Alignment:
Q  4 tgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  34364770 tgagggaatgtaatgttatgagggaatttaaatactttgag 34364810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 12064423 - 12064316
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12064423 tgttgaggaaatgtaatgttatgtgggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccaaaca 12064324  T
Q  101 cactctaa 108  Q
    ||||||||    
T  12064323 cactctaa 12064316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 25935248 - 25935149
Alignment:
Q  8 gaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 107  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  25935248 gaaatgtaatgttatgagggaattcaaatactttgagataa-ttgcctagaattttaaattctttaaaatttctaaattacctcatccaaacacactcta 25935150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 20320620 - 20320529
Alignment:
Q  15 aatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20320620 aatgtaatgaaggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 20320529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 19533870 - 19533769
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    ||||||||||| ||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  19533870 ttgaggaaatgtaatattacgagggaattcaaatattttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcattcaaacaca 19533771  T
Q  103 ct 104  Q
    ||    
T  19533770 ct 19533769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 37722859 - 37722754
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||   |||||||||    
T  37722859 tgttgaggaaatgtagtgttatgagggaattcaaatactttgaggtaaattacctagaattttaaattctttaaaatttccaaattactcaatccaaaca 37722760  T
Q  101 cactct 106  Q
    ||||||    
T  37722759 cactct 37722754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 32249709 - 32249647
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32249709 taaattgcctagaattctaaattctttaaaattttcaaattacctcatccaaacacactctaa 32249647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 12480389 - 12480449
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  12480389 taaattgcttagaattctaaattctttaaaattttccaattacctcatccaaacacactct 12480449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 37145458 - 37145395
Alignment:
Q  9 aaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattcttta 73  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37145458 aaatgtaatgctatgagggaattcaaatactttgagat-aattgcctagaattttaaattcttta 37145395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 13391022 - 13390962
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  13391022 taaattgcttagaattctaaattctttaaaatttcccaattacctcatccaaacacactct 13390962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 15270475 - 15270409
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaat 114  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||| |||||    
T  15270475 aattacctagaattctaaattctttaaaattttccaattacctcattcaaacacattctaagggaat 15270409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 28489951 - 28490009
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    |||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  28489951 taaattgcctaggattctaaattccttaaaattttctaattacctcatccaaacacact 28490009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 40089472 - 40089410
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||| | | ||||||||||||||||| | ||||||||||||||||||||||||||    
T  40089472 taaattgcctaggaatctaaattctttaaaatttcctaattacctcatccaaacacactctaa 40089410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 41761804 - 41761742
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    ||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  41761804 taaattgcctaaaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 41761742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 38178865 - 38178813
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaa 98  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  38178865 taaattgcctataattctaaattctttaaaattttccaattacctcatccaaa 38178813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 38206089 - 38206037
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaa 98  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  38206089 taaattgcctataattctaaattctttaaaattttccaattacctcatccaaa 38206037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 927790 - 927853
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    ||||||| |||||||| |||||||||||||||||   ||||||||||| |||||||||||||||    
T  927790 taaattgtctagaattctaaattctttaaaatttctcaattacctcattcaaacacactctaaa 927853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 6771881 - 6771823
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||| ||||||| ||||||||||||||||| | ||||| ||||||||||||||||||    
T  6771881 aattgcatagaattctaaattctttaaaatttcccaattaactcatccaaacacactct 6771823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 15580059 - 15579993
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaatta-cctcatccaaacacactctaaagg 111  Q
    ||||||| ||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| ||||    
T  15580059 taaattgtctagaattttaaattttttaaaatttcctaattaccctcatccaaacacactcttaagg 15579993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 22304794 - 22304732
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||| ||| ||||||||||||||||| | |||||||||||| ||| |||||||||    
T  22304794 taaattgcctaggattctaaattctttaaaatttcccaattacctcatcaaaatacactctaa 22304732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 22304672 - 22304729
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 103  Q
    ||||||| |||||||| |||||||||||||||||   |||||||||||||||||||||    
T  22304672 taaattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacac 22304729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 28490395 - 28490458
Alignment:
Q  46 taaattgcctagaattttaaattcttt--aaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||| ||||||||||||||||  |||| |||| ||||||||||||||||||||||||||    
T  28490395 taaattgccttgaattttaaattctttaaaaaaatttc-aattacctcatccaaacacactctaa 28490458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 17541944 - 17541884
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||| |||| ||| |||||||||||||||||   ||||||||||||||||||||||||    
T  17541944 taaattgtctaggattctaaattctttaaaatttctcaattacctcatccaaacacactct 17541884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 32317175 - 32317225
Alignment:
Q  58 aattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||||||    
T  32317175 aattttaaattctttaaaattttc-aattacctaatccaaacactctctaaa 32317225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 35111702 - 35111760
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||| ||||||||| |||||||||||||||||   ||||||| ||||||||||||||||    
T  35111702 aattccctagaattctaaattctttaaaatttctcaattaccccatccaaacacactct 35111760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 19533951 - 19533910
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  19533951 ttgagggaatgtaatgttatgagggaattcaaatactttgag 19533910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 37091078 - 37091135
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 105  Q
    |||| |||||| || |||||||||||| |||| | |||||||||||||||||||||||    
T  37091078 aattacctagagttctaaattctttaagatttaccaattacctcatccaaacacactc 37091135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 37145362 - 37145399
Alignment:
Q  73 aaaattttcaaattacctcatccaaacacactctaaag 110  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  37145362 aaaatttccaaattacctcatccaaacacactctaaag 37145399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 17492731 - 17492691
Alignment:
Q  64 aaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  17492731 aaattttttaaaattttctaattacctcatccaaacacact 17492691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 33995502 - 33995442
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    ||||||||| |||| ||| |||||||||||||   |||||| |||||||||||||||||||    
T  33995502 aattgcctaaaattctaatttctttaaaatttgtcaattacatcatccaaacacactctaa 33995442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 8255446 - 8255507
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 107  Q
    ||||||||||| |||| ||||||||| |||||||   ||||| |||||||||||| ||||||    
T  8255446 taaattgcctaaaattataaattcttcaaaatttctcaattatctcatccaaacatactcta 8255507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 25935334 - 25935293
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| |||||||||||| |||||||||||||||||    
T  25935334 ttgagggaatgtaatgttatgaggaaattcaaatactttgag 25935293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 33146570 - 33146639
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaatt 115  Q
    |||||||||||  ||| |||||||||| ||||||   || ||||||||||||||||||||| ||| ||||    
T  33146570 taaattgcctaagattctaaattctttgaaatttctcaactacctcatccaaacacactcttaagaaatt 33146639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 37145545 - 37145504
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||||||| ||||||||||||||||||    
T  37145545 ttgagggaatgtaatgttatgagagaattcaaatactttgag 37145504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 37722938 - 37722897
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| |||||| |||||||||||||||||||||||    
T  37722938 ttgagggaatgtaatgttttgagggaattcaaatactttgag 37722897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 40090458 - 40090417
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    ||||||||||| |||||| ||| |||||||||||||||||||    
T  40090458 ttgaggaaatgtaatgttttgatggaattcaaatactttgag 40090417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 41789591 - 41789634
Alignment:
Q  65 aattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||    
T  41789591 aattctttaaaattttcat-ttacctcgtccaaacacactctaaa 41789634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 10633136 - 10633243
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10633136 tgttgaggaaatgtaatattatgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccaaaca 10633235  T
Q  101 cactctaa 108  Q
    ||||||||    
T  10633236 cactctaa 10633243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21012544 - 21012437
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  21012544 tgttgaggaaatgtaatgttatgagggaattcaaatattttgaggtaaattgtctagaattttaaattctttaaaatttttaaattacctcatccaaaca 21012445  T
Q  101 cactctaa 108  Q
    ||||||||    
T  21012444 cactctaa 21012437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 31473954 - 31474059
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| |||||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31473954 tgttgaggaaatgtaatgttatgacggaattcaaataatttgaggtaaattgtctagaattttaaattctttaaaatttccaaattacctcatccaaaca 31474053  T
Q  101 cactct 106  Q
    ||||||    
T  31474054 cactct 31474059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 3803709 - 3803776
Alignment:
Q  41 tgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3803709 tgaggtaagttgcctaaaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 3803776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 47108708 - 47108765
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 103  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  47108708 taaattgcctagaattctaaattctttaaaattttccaattacctcatccaaacacac 47108765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 40547828 - 40547768
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  40547828 taaattgcctagaattttaaattctttaaaatttctcaattacctcatccaaacacactct 40547768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 27284280 - 27284221
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 105  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  27284280 taaattgcctagaattctaaattctttaaaattttcaaattatatcatccaaacacactc 27284221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 46242682 - 46242619
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    |||||||| ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||    
T  46242682 taaattgcttagaattataaattctttaaaatttcccaattacctcatccaaacacactctaaa 46242619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 30303610 - 30303668
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||    
T  30303610 aattgcctagaattttaaattctttaaaatttctcaattatctcatccaaacacactct 30303668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 42776573 - 42776630
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 103  Q
    |||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||    
T  42776573 taaattgcttaggattctaaattctttaaaattttccaattacctcatccaaacacac 42776630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 2126326 - 2126386
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||||||    
T  2126326 taaattgcctagaattctaaattctttaaaatttctcaattaccccatccaaacacactct 2126386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 19461326 - 19461266
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||||| |||||||||||||||||||  ||| ||||||||||| ||||||||||||    
T  19461326 taaattgcctaaaattttaaattctttaaaaaattctaattacctcattcaaacacactct 19461266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 35470612 - 35470672
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||||||||||||||   |||||| |||||||||||||||||    
T  35470612 taaattgcctagaattctaaattctttaaaatttctcaattacatcatccaaacacactct 35470672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 42775840 - 42775780
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  42775840 taaatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 42775780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 21782463 - 21782521
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  21782463 aattgtctagaattctaaattctttaaaatttcacaattacctcatccaaacacactct 21782521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 31948061 - 31948119
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  31948061 taaattgcctaaaattttaaattctttaaaagtttccaattacctcgtccaaacgcact 31948119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 41139960 - 41140022
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||| |||||||||||||||||||||||||   |||||| || ||||||||||||||||    
T  41139960 taaattgcttagaattttaaattctttaaaatttctcaattacttcttccaaacacactctaa 41140022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 5579700 - 5579654
Alignment:
Q  57 gaattttaaattctttaaaattttcaaattacctcatccaaacacac 103  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  5579700 gaattttaaattcttcaaaattttctaattacctcattcaaacacac 5579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 28751804 - 28751742
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    ||||||||||| |||| |||||| ||||||||||   ||||| ||||||||||||||||||||    
T  28751804 taaattgcctataattctaaattttttaaaatttctcaattatctcatccaaacacactctaa 28751742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 10633058 - 10633099
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  10633058 ttgagggaatgtaatgttatgagggaattcaaatactttgag 10633099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 31473875 - 31473916
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  31473875 ttgagggaatgtaatgttatgagggaattcaaatactttgag 31473916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 16299829 - 16299781
Alignment:
Q  54 ctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    ||||||||||||||||| ||| |||||| ||||||||||| ||||||||    
T  16299829 ctagaattttaaattctctaatattttccaattacctcattcaaacaca 16299781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 24705820 - 24705880
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||| |||| |||| ||||||||| ||||||||  ||||||| ||||||||||||||||||    
T  24705820 aattccctaaaattctaaattcttcaaaatttttcaattaccccatccaaacacactctaa 24705880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 54566664 - 54566724
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||| ||| ||||||||||||| |||||||||   ||||||| ||||||||||||||||||    
T  54566664 aattcccttgaattttaaattcattaaaatttctcaattaccccatccaaacacactctaa 54566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 56118229 - 56118170
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 105  Q
    |||||||||||||||| | | |||| ||||||||   |||||||||||||||||||||||    
T  56118229 taaattgcctagaattctgagttctctaaaatttgtcaattacctcatccaaacacactc 56118170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 16516666 - 16516716
Alignment:
Q  56 agaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||| ||||||||| |||||||   ||||||||||||||||||||||||    
T  16516666 agaattctaaattcttcaaaatttctcaattacctcatccaaacacactct 16516716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 1539667 - 1539708
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| |||||| |||||||||||||||||||||||    
T  1539667 ttgagggaatgtaatgttttgagggaattcaaatactttgag 1539708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 26534976 - 26535009
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattt 79  Q
    |||||||||||||||| |||||||||||||||||    
T  26534976 taaattgcctagaattctaaattctttaaaattt 26535009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 26162091 - 26161987
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26162091 tgttaaggaaatgtaatgttatgagggaattcaaatactttgagataa-ttgcctagaattttaaattctttaaaatttccaaattacctcatccaaaca 26161993  T
Q  101 cactct 106  Q
    ||||||    
T  26161992 cactct 26161987  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 29639169 - 29639056
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattt-taaattctttaaaattttcaaattacctcatccaaac 99  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  29639169 tgttgaggaaatgtaatgttatgagagaattcaaatactttgaggtaaattgcctagaatttaaaaattctttaaaattttcaaattacctcatccaaac 29639070  T
Q  100 acactctaaaggaa 113  Q
    ||||||||| ||||    
T  29639069 acactctaagggaa 29639056  T

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Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 31632826 - 31632928
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||    
T  31632826 tgttgaggaaatgtaatgttatgagggaattcaaatactttgaggtaaattgtctagaattttaaattctt--aaattttcaaattaccttatccaaaca 31632923  T
Q  101 cactc 105  Q
    |||||    
T  31632924 cactc 31632928  T

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Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 6498717 - 6498614
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||||||||||    
T  6498717 ttgaggaaatgtaatgttatgaaggaattcaaatactttgaggtaaattgcctagaattttaaagaatttaaaatttccaaattacctcatccaaacaca 6498618  T
Q  103 ctct 106  Q
    ||||    
T  6498617 ctct 6498614  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 14602831 - 14602769
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  14602831 taaattgcctagaattctaaattctttaaaatttttcaattacctcatccaaacacactctaa 14602769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 14790557 - 14790617
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  14790557 taaattgcctaggattctaaattctttaaaattttccaattacctcatccaaacacactct 14790617  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 43791511 - 43791571
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  43791511 taaattgccaagaattctaaattctttaaaattttccaattacctcatccaaacacactct 43791571  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 39342220 - 39342158
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  39342220 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 39342158  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 35456294 - 35456359
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagg 111  Q
    |||||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||| ||||    
T  35456294 taaattgcctagaattctaaattctttaaaaattttcaattacctcatccaaacacactcttaagg 35456359  T

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Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 38320770 - 38320825
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  38320770 aattgcctagaattttaaattctttaaaattttc-aattaccacatccaaacacact 38320825  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 2411801 - 2411863
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||| ||||||    
T  2411801 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacactctctaa 2411863  T

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Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 40496208 - 40496270
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||| |||||||    
T  40496208 taaattgcctagaattataaattctttaaaatttcttaattacctcatccaaacatactctaa 40496270  T

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Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 23548179 - 23548119
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  23548179 taaatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 23548119  T

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Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 28538737 - 28538677
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||||||    
T  28538737 taaattgcctaaaattctaaattctttaaaatttctcaattacctcatccaaacacactct 28538677  T

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Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 36328388 - 36328328
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||| ||||||||||   ||||||||||||||||||||||||    
T  36328388 taaattgcctagaattctaaattttttaaaatttctcaattacctcatccaaacacactct 36328328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 42817012 - 42817072
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||| ||||||||||    
T  42817012 taaattgcctagaattctaaattctttaaaatttctcaattacctcatcctaacacactct 42817072  T

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Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 30587490 - 30587427
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 109  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| ||| ||||    
T  30587490 taaattgcctagaattctaaattctctaaaattttccaattacctcgtccaaacatactataaa 30587427  T

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Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 37460528 - 37460470
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||| ||||||||||||||||||||||| |||  |||||||||||||||| |||||||    
T  37460528 aattgtctagaattttaaattctttaaaaattttcaattacctcatccaaatacactct 37460470  T

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Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 45181814 - 45181757
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||    
T  45181814 aattgcctagaattctaaactctctaaaattttcaa-ttacctcatccaaacacactct 45181757  T

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Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 35488714 - 35488761
Alignment:
Q  58 aattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||    
T  35488714 aattttaaattctttaaaattttc-aattacatcatccaaacacactct 35488761  T

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Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 45984823 - 45984883
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||||||||||||||    |||||| ||||||||||||||||    
T  45984823 taaattgcctagaattctaaattctttaaaatttctctattaccccatccaaacacactct 45984883  T

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Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 45989183 - 45989243
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||||||||||||||    |||||| ||||||||||||||||    
T  45989183 taaattgcctagaattctaaattctttaaaatttctctattaccccatccaaacacactct 45989243  T

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Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 26162170 - 26162129
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  26162170 ttgagggaatgtaatgttatgagggaattcaaatactttgag 26162129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 31632748 - 31632789
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  31632748 ttgagggaatgtaatgttatgagggaattcaaatactttgag 31632789  T

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Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 35776988 - 35776947
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  35776988 ttgagggaatgtaatgttatgagggaattcaaatactttgag 35776947  T

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Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 25189259 - 25189219
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttga 43  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  25189259 ttgaggtaatgcaatgttttgagggaattcaaatactttga 25189219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 32651013 - 32651073
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||| ||| | |||||||||| |||| | ||||||||||||||||| ||||||    
T  32651013 taaattgcctaggattctgaattctttaagatttcccaattacctcatccaaactcactct 32651073  T

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Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 40495691 - 40495750
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 107  Q
    |||| |||| |||| ||||||||| |||||||   |||||||||||||||||||||||||    
T  40495691 aattccctataattctaaattcttcaaaatttctcaattacctcatccaaacacactcta 40495750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 1580381 - 1580439
Alignment:
Q  49 attgcctagaattttaaattctttaaaattttcaaattacctcatccaa-acacactct 106  Q
    |||||||| |||||||||||||||||||  ||  ||||||||||||||| |||||||||    
T  1580381 attgcctaaaattttaaattctttaaaaaatttcaattacctcatccaacacacactct 1580439  T

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Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 15990917 - 15990967
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgc 53  Q
    |||||| |||| |||||  ||| ||||||||||||||||||||||||||||    
T  15990917 ttgaggtaatgtaatgtcttgaaggaattcaaatactttgagataaattgc 15990967  T

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Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 43791115 - 43791157
Alignment:
Q  2 gttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    ||||||| |||| |||||| |||||||||||||||||||||||    
T  43791115 gttgagggaatgtaatgttttgagggaattcaaatactttgag 43791157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 26416413 - 26416469
Alignment:
Q  49 attgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||||||| ||||||||| |||||||   ||||||||||| ||||||||||||    
T  26416413 attgcctagaattctaaattcttcaaaatttctcaattacctcat-caaacacactct 26416469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 6498798 - 6498758
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttga 43  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  6498798 ttgagggaatgtaatgttttgagggaattcaaatactttga 6498758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 30080368 - 30080312
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    |||||||| ||||||| ||||||||| |||||||   |||||||||||| |||||||    
T  30080368 taaattgcttagaattctaaattcttcaaaatttctcaattacctcatcaaaacaca 30080312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 23011839 - 23011949
Alignment:
Q  1 tgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcc-aaac 99  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  23011839 tgttaaggaaatgtaatgttatgagggaattcaaatactttgagataa-ttgcctagaattttaaattctttaaaatttctaaattacctcatccaaaac 23011937  T
Q  100 acactctaaagg 111  Q
    ||||||||||||    
T  23011938 acactctaaagg 23011949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 30444906 - 30444804
Alignment:
Q  6 aggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 105  Q
    |||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  30444906 aggaaatgtaatgttaggaaggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacttcatccaaacacactc 30444807  T
Q  106 taa 108  Q
    |||    
T  30444806 taa 30444804  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 36103208 - 36103308
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    ||||||||||| |||||||||| | |||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36103208 ttgaggaaatgtaatgttatgaagaaattcaaatatttt-aggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacaca 36103306  T
Q  103 ct 104  Q
    ||    
T  36103307 ct 36103308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 29611812 - 29611872
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  29611812 taaattgcctaaaattctaaattctttaaaattttccaattaccacatccaaacacactct 29611872  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 44346281 - 44346221
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  44346281 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 44346221  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 31980106 - 31980047
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 105  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||    
T  31980106 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactc 31980047  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 14727 - 14789
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| |||||||||||||||||   |||| |||||||||||||||||||||    
T  14727 taaattgcctagaattctaaattctttaaaatttctcaatttcctcatccaaacacactctaa 14789  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 13145073 - 13145131
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||| |||||||||||    
T  13145073 taaattgcctagaattttaaattctttaaattttcccaattacctcacccaaacacact 13145131  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 33376889 - 33376827
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  33376889 taaattacctagaattctaaattctttaaaatttatcaattacctcatccaaacacactctaa 33376827  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 40733695 - 40733641
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 100  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  40733695 taaattgcctagaattttaaattctttaaaatttctcaattacctcatccaaaca 40733641  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 43185469 - 43185531
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    ||||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  43185469 taaattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 43185531  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 29256973 - 29256913
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||||||||||||| |||||||||||||||||   ||||||||| ||||||||||||||    
T  29256973 taaattgcctagaattctaaattctttaaaatttctcaattacctcgtccaaacacactct 29256913  T

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Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 35978652 - 35978592
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||| ||||||||||||||||||||||||||   |||| |||||||||||||||||||    
T  35978652 taaattgactagaattttaaattctttaaaatttctcaattgcctcatccaaacacactct 35978592  T

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Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 515508 - 515449
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattt 62  Q
    ||||||||||| |||||||||| |||||||||||| |||||| ||||||||||| |||||    
T  515508 ttgaggaaatgtaatgttatgaaggaattcaaatattttgaggtaaattgcctaaaattt 515449  T

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Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 10593562 - 10593620
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 105  Q
    ||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||    
T  10593562 taaattgcctagaattttaaatt-tttaaaatttctcaattacctcatccaaacacactc 10593620  T

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Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 31976725 - 31976666
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 105  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||| ||||||    
T  31976725 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaaaacactc 31976666  T

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Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 26520042 - 26519984
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 104  Q
    ||||||||||||||||||||||||||||||||||   |||||| | |||||||||||||    
T  26520042 taaattgcctagaattttaaattctttaaaatttatcaattactttatccaaacacact 26519984  T

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Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 33986486 - 33986548
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    ||||||||||||||||   |||||||||||||||   ||||||||||||||||||||||||||    
T  33986486 taaattgcctagaattccgaattctttaaaatttctcaattacctcatccaaacacactctaa 33986548  T

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Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 29482401 - 29482341
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||||| |||| |||| |||||||||||||||||   ||||||||||||||||||||||||    
T  29482401 taaatttcctataattctaaattctttaaaatttctcaattacctcatccaaacacactct 29482341  T

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Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 23011760 - 23011801
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 44  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  23011760 ttgagggaatgtaatgttatgagggaattcaaatactttgag 23011801  T

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Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 21465352 - 21465308
Alignment:
Q  17 tgttatgagggaattcaaatactttgagataaattgcctagaatt 61  Q
    ||||||||||||||||||||||||| || |||||| |||||||||    
T  21465352 tgttatgagggaattcaaatactttaaggtaaattacctagaatt 21465308  T

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Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 28190291 - 28190227
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 110  Q
    |||||||| ||||||| ||| |||||| |||||||| ||||| ||||| |||| |||||||||||    
T  28190291 taaattgcgtagaattctaagttctttcaaattttcgaattatctcattcaaatacactctaaag 28190227  T

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Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 9983146 - 9983197
Alignment:
Q  55 tagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    ||||||| ||||||||| |||||||   ||||||||||||||||||||||||    
T  9983146 tagaattctaaattcttcaaaatttctcaattacctcatccaaacacactct 9983197  T

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Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 13144615 - 13144650
Alignment:
Q  9 aaatgcaatgttatgagggaattcaaatactttgag 44  Q
    ||||| ||||||||||||||||||||||||||||||    
T  13144615 aaatgtaatgttatgagggaattcaaatactttgag 13144650  T

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Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 14013326 - 14013267
Alignment:
Q  49 attgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    ||||||||||||| ||||||| | ||||||||| ||||| ||| |||||| |||||||||    
T  14013326 attgcctagaattctaaattcatcaaaattttctaattaactcgtccaaatacactctaa 14013267  T

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Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 1087906 - 1087844
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||| |||| |||| |||||||||||||||||   ||||||||||| |||||| |||||||    
T  1087906 taaatttcctaaaattctaaattctttaaaatttctcaattacctcattcaaacatactctaa 1087844  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 7079780 - 7079825
Alignment:
Q  48 aattgcctagaattttaaattctttaaaattttcaaattacctcat 93  Q
    |||| |||||||||||||||||||||||||||   |||||||||||    
T  7079780 aattacctagaattttaaattctttaaaatttctcaattacctcat 7079825  T

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Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 34009178 - 34009247
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaatt 115  Q
    |||||||||||  ||| |||||||||| ||||||   || ||||||||||||||||||||| ||| ||||    
T  34009178 taaattgcctaagattctaaattctttgaaatttctcaactacctcatccaaacacactcttaagaaatt 34009247  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 8049292 - 8049328
Alignment:
Q  15 aatgttatgagggaattcaaatactttgagataaatt 51  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  8049292 aatgttttgagggaattcaaatactttgaggtaaatt 8049328  T

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Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 13404960 - 13404912
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaatt 51  Q
    |||||| |||| |||||| ||||||||||||| ||||||||||| ||||    
T  13404960 ttgagggaatgtaatgttttgagggaattcaactactttgagatgaatt 13404912  T

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Target: scaffold0027 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 11276 - 11378
Alignment:
Q  3 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 102  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  11276 ttgaggaaatgtaatgttatgaaggaattcaaatactttgaggtaaattgcctaaaattttaaattctttacaatttccaaattacctcatccaaacaca 11375  T
Q  103 ctc 105  Q
    |||    
T  11376 ctc 11378  T

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Target: scaffold0169 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 4508 - 4570
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 108  Q
    |||||||||||||||| ||||||||||||||||| | |||||  |||||||||||||||||||    
T  4508 taaattgcctagaattctaaattctttaaaatttcccaattagttcatccaaacacactctaa 4570  T

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Target: scaffold0417 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 11556 - 11499
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 103  Q
    |||||| | ||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  11556 taaattacttagaattctaaattctttaaaattttccaaatacctcatccaaacacac 11499  T

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Target: scaffold0301 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 7641 - 7688
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaattacctcat 93  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||    
T  7641 taaattgcctagaattctaaattctttaaaatttctcaattacctcat 7688  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 19367 - 19326
Alignment:
Q  46 taaattgcctagaattttaaattctttaaaattttcaaatta 87  Q
    ||||||||||| |||| ||||||||||||||||| |||||||    
T  19367 taaattgcctaaaattctaaattctttaaaatttccaaatta 19326  T

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Target: scaffold0318 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 3358 - 3406
Alignment:
Q  58 aattttaaattctttaaaattttcaaattacctcatccaaacacactct 106  Q
    |||| |||||||||||||||||   |||||||||||||||| |||||||    
T  3358 aattctaaattctttaaaatttctcaattacctcatccaaagacactct 3406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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