View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11993_low_3 (Length: 648)
Name: NF11993_low_3
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11993_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 30853832 - 30854222
Alignment:
| Q |
1 |
gtaaaatagaaaactaatagattataatgtcaaataataacatgcacaccaacaaattacggtgaacatagtcgtaacctgtaacctttccagtttctat |
100 |
Q |
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| T |
30853832 |
gtaaaatataaaactaatagattataatgtcaaataatgatatgcacaccaacaaattagggtgaacatagtcgtaacct-------tttcagtttctat |
30853924 |
T |
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| Q |
101 |
tatagattagaacaattaggtggattccttgaaacgctttctcttgtagtaaagaacaaggaagatgatgattcatggatattcaaacactcactctaca |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |
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| T |
30853925 |
tatagattagaacaattaggtggactccttgaaacgctttctcttgtagtaaagaacaaggaagatgataattcatggaca-tcaaacactcactctaca |
30854023 |
T |
|
| Q |
201 |
cttgagagataaagaaataaaaagactgnnnnnnnnnnnnnnnnnnnnnngtgatgtatttggaagagaaataaagaataatgaggagttacatgatatc |
300 |
Q |
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| T |
30854024 |
cttgagagataaagaaataaaaagattg---------atatgatatatatgtgatgtatttggaagagaaataaagaataatgaggagttacatgatatc |
30854114 |
T |
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| Q |
301 |
ataatccaaagg-nnnnnnnncatacaaaactgcataaaaagtatttgactgcgattttttataatatcaaggatcacaatgtagctgaactcaacattt |
399 |
Q |
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| T |
30854115 |
ataatccaaaggaaaaaaaaacatacaaaactgcataaaatgtatttgactgcgattttttataatatgaaggatcacaatgtagctgaactcaacattt |
30854214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 542 - 637
Target Start/End: Original strand, 30854366 - 30854465
Alignment:
| Q |
542 |
gtttacaaaatgacaagacacatattatggtgatagactaaagctagctgtctaaagattccagcttaatttgtccatg----catgacacctatgcttc |
637 |
Q |
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| T |
30854366 |
gtttacaaaatgacaagacacatattatggtgatagactaaagctagctgtctaaagattccagcttaatttgtccatgcatgcatgacacctatgcttc |
30854465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 30854241 - 30854288
Alignment:
| Q |
417 |
ggtgattgaacaaaatattaaggaggaaaacttgcaagacacaacatg |
464 |
Q |
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| T |
30854241 |
ggtaattgaacaaaatattaaggaggaaaacttgcaaggcacaacatg |
30854288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 560 - 637
Target Start/End: Original strand, 30878581 - 30878664
Alignment:
| Q |
560 |
cacatattatggtgatagactaaagctagctgtctaaaga--ttccagcttaatttgtccatg----catgacacctatgcttc |
637 |
Q |
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| T |
30878581 |
cacatattatggtgataaactagagctagctatctaaagagattctagcttaatttgtccatgcatgcatgacacctatgcttc |
30878664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 624
Target Start/End: Complemental strand, 15064309 - 15064233
Alignment:
| Q |
548 |
aaaatgacaagacacatattatggtgatagactaaagctagctgtctaaagattccagcttaatttgtccatgcatg |
624 |
Q |
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| T |
15064309 |
aaaatgacaagacacatattatggagatatactagagctagttgttgagagattctagcttaatttgtccatgcatg |
15064233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 15071501 - 15071379
Alignment:
| Q |
91 |
cagtttctattatagattagaacaattaggtggattccttgaaacgctttctcttgtagtaaagaacaaggaagatgatgattcatggatattcaaacac |
190 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||| | | ||||| ||| | ||| || ||||| || | ||||||| |
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| T |
15071501 |
cagtttctattatagattagaacaattaggtggactccttgaaacaatttctctcctcggaaagacaaagaaggattataattcaaagacacccaaacac |
15071402 |
T |
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| Q |
191 |
tcactctacacttgagagataaa |
213 |
Q |
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||| | ||||||||||||||||| |
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| T |
15071401 |
tcattttacacttgagagataaa |
15071379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 15064511 - 15064467
Alignment:
| Q |
358 |
tttataatatcaaggatcacaatgtagctgaactcaacatttgac |
402 |
Q |
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| T |
15064511 |
tttataatatcaaggatcacaatgttggtgaacacaacatttgac |
15064467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 15076361 - 15076292
Alignment:
| Q |
333 |
cataaaaagtatttgactgcgattttttataatatcaaggatcacaatgtagctgaactcaacatttgact |
403 |
Q |
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| T |
15076361 |
catacaaaatatttaagtgcgatttttcataatattaaggatcacaatgtagctcaacacaa-atttgact |
15076292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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