View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11993_low_4 (Length: 521)

Name: NF11993_low_4
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11993_low_4
NF11993_low_4
[»] chr1 (38 HSPs)
chr1 (48-506)||(1389513-1389955)
chr1 (1-51)||(23536064-23536114)
chr1 (1-46)||(28745799-28745844)
chr1 (1-48)||(4038187-4038234)
chr1 (1-48)||(15034771-15034818)
chr1 (1-48)||(30190248-30190295)
chr1 (1-51)||(4038072-4038122)
chr1 (1-50)||(8224766-8224815)
chr1 (1-50)||(15034657-15034706)
chr1 (1-50)||(26501105-26501154)
chr1 (1-50)||(27935597-27935646)
chr1 (1-50)||(38277413-38277462)
chr1 (1-46)||(40264142-40264187)
chr1 (1-50)||(43623004-43623053)
chr1 (3-48)||(44410311-44410356)
chr1 (5-48)||(24273250-24273293)
chr1 (1-40)||(34756435-34756474)
chr1 (1-39)||(32573034-32573072)
chr1 (1-50)||(44410423-44410472)
chr1 (1-50)||(50005077-50005126)
chr1 (1-46)||(50005191-50005236)
chr1 (4-52)||(27804380-27804428)
chr1 (1-49)||(32287959-32288007)
chr1 (1-45)||(45565397-45565441)
chr1 (1-48)||(6470712-6470759)
chr1 (1-40)||(27804273-27804312)
chr1 (1-40)||(37447928-37447967)
chr1 (8-50)||(5474415-5474457)
chr1 (1-51)||(31166307-31166357)
chr1 (1-51)||(34756539-34756589)
chr1 (1-39)||(44570687-44570725)
chr1 (13-50)||(15245458-15245495)
chr1 (1-46)||(28632611-28632656)
chr1 (1-50)||(29446748-29446797)
chr1 (13-50)||(34007441-34007478)
chr1 (1-46)||(38277527-38277571)
chr1 (13-54)||(40264042-40264083)
chr1 (1-45)||(37036975-37037019)
[»] chr2 (27 HSPs)
chr2 (242-506)||(4747164-4747422)
chr2 (1-51)||(14365697-14365747)
chr2 (1-57)||(3092273-3092329)
chr2 (1-49)||(14537198-14537246)
chr2 (1-53)||(27033485-27033537)
chr2 (1-48)||(784905-784952)
chr2 (1-48)||(41461627-41461674)
chr2 (1-51)||(17180294-17180344)
chr2 (5-50)||(10480117-10480162)
chr2 (1-46)||(11532279-11532324)
chr2 (1-50)||(11684597-11684646)
chr2 (5-46)||(11793897-11793938)
chr2 (1-42)||(30698287-30698328)
chr2 (3-51)||(769033-769081)
chr2 (3-51)||(11141302-11141350)
chr2 (1-40)||(11716511-11716550)
chr2 (1-48)||(14365811-14365858)
chr2 (3-50)||(33189285-33189332)
chr2 (1-51)||(7228038-7228088)
chr2 (1-55)||(41461508-41461562)
chr2 (3-48)||(1583837-1583882)
chr2 (1-48)||(10244177-10244224)
chr2 (1-48)||(11716408-11716455)
chr2 (1-50)||(784791-784840)
chr2 (3-48)||(35047707-35047752)
chr2 (1-46)||(44256219-44256263)
chr2 (1-45)||(28740599-28740643)
[»] chr5 (40 HSPs)
chr5 (1-48)||(37722917-37722964)
chr5 (1-50)||(9764336-9764385)
chr5 (1-50)||(15374072-15374121)
chr5 (1-50)||(40643929-40643978)
chr5 (1-48)||(22303893-22303940)
chr5 (1-51)||(2316375-2316425)
chr5 (1-46)||(2721583-2721628)
chr5 (1-50)||(6634013-6634062)
chr5 (1-46)||(13243516-13243561)
chr5 (5-50)||(25935317-25935362)
chr5 (1-46)||(28828369-28828414)
chr5 (1-50)||(32470880-32470929)
chr5 (1-50)||(40090437-40090486)
chr5 (1-53)||(26281292-26281344)
chr5 (1-48)||(9764450-9764497)
chr5 (1-48)||(15804322-15804369)
chr5 (1-48)||(22766952-22766999)
chr5 (3-50)||(41762240-41762287)
chr5 (1-47)||(3563278-3563324)
chr5 (1-47)||(20523245-20523291)
chr5 (1-47)||(33245395-33245441)
chr5 (1-50)||(927300-927349)
chr5 (1-46)||(15804406-15804451)
chr5 (1-50)||(23092074-23092123)
chr5 (1-46)||(28828459-28828504)
chr5 (3-50)||(5658774-5658821)
chr5 (5-40)||(9894349-9894384)
chr5 (1-48)||(15373960-15374007)
chr5 (1-32)||(23091978-23092009)
chr5 (5-40)||(37145528-37145563)
chr5 (13-55)||(22305105-22305147)
chr5 (13-50)||(2550326-2550363)
chr5 (1-38)||(13243469-13243506)
chr5 (1-50)||(16515130-16515179)
chr5 (5-46)||(19533934-19533975)
chr5 (1-50)||(32250121-32250169)
chr5 (1-50)||(32390084-32390133)
chr5 (1-50)||(34982214-34982262)
chr5 (1-50)||(40809339-40809388)
chr5 (8-48)||(20523133-20523173)
[»] chr4 (33 HSPs)
chr4 (1-48)||(1107164-1107211)
chr4 (1-51)||(41498602-41498652)
chr4 (1-48)||(2125857-2125904)
chr4 (1-48)||(4896648-4896695)
chr4 (1-48)||(10128086-10128133)
chr4 (1-48)||(11348349-11348396)
chr4 (1-48)||(49111424-49111471)
chr4 (1-55)||(4896744-4896798)
chr4 (1-55)||(16516164-16516218)
chr4 (1-46)||(7352814-7352859)
chr4 (1-50)||(7352924-7352973)
chr4 (1-50)||(15660181-15660230)
chr4 (1-49)||(31742876-31742924)
chr4 (1-48)||(857351-857398)
chr4 (1-48)||(11040968-11041014)
chr4 (1-48)||(14982280-14982327)
chr4 (1-48)||(15660295-15660342)
chr4 (5-48)||(31473849-31473892)
chr4 (1-48)||(36455907-36455954)
chr4 (4-50)||(1112603-1112649)
chr4 (1-47)||(4441338-4441384)
chr4 (1-51)||(10127971-10128021)
chr4 (1-46)||(26250911-26250956)
chr4 (1-50)||(36456038-36456087)
chr4 (1-46)||(42542979-42543024)
chr4 (1-46)||(42844655-42844700)
chr4 (5-45)||(10633035-10633075)
chr4 (1-40)||(1539649-1539688)
chr4 (1-48)||(28845983-28846030)
chr4 (13-50)||(14982385-14982422)
chr4 (1-46)||(19461762-19461807)
chr4 (1-50)||(42844541-42844590)
chr4 (4-40)||(28845879-28845915)
[»] chr7 (30 HSPs)
chr7 (1-51)||(40110734-40110784)
chr7 (1-50)||(43955515-43955564)
chr7 (1-48)||(2057507-2057554)
chr7 (1-48)||(34398961-34399008)
chr7 (1-51)||(29195706-29195756)
chr7 (1-50)||(2057393-2057442)
chr7 (5-50)||(31632720-31632765)
chr7 (1-46)||(43955626-43955671)
chr7 (3-51)||(39342656-39342704)
chr7 (1-48)||(6498777-6498824)
chr7 (3-50)||(14603276-14603323)
chr7 (5-48)||(26162153-26162196)
chr7 (1-48)||(28539180-28539227)
chr7 (1-51)||(29065816-29065866)
chr7 (5-55)||(29639231-29639281)
chr7 (1-50)||(5644675-5644724)
chr7 (1-50)||(21635883-21635932)
chr7 (3-48)||(35455804-35455849)
chr7 (5-50)||(35776971-35777016)
chr7 (1-50)||(40110850-40110899)
chr7 (1-48)||(5644789-5644836)
chr7 (1-40)||(21635997-21636036)
chr7 (1-48)||(23548623-23548670)
chr7 (1-47)||(9784943-9784989)
chr7 (13-51)||(31913233-31913271)
chr7 (3-40)||(30629065-30629102)
chr7 (5-50)||(34388263-34388308)
chr7 (1-50)||(40854082-40854131)
chr7 (1-50)||(44915193-44915242)
chr7 (1-53)||(29065931-29065983)
[»] chr3 (29 HSPs)
chr3 (1-50)||(42005978-42006027)
chr3 (1-50)||(44436256-44436305)
chr3 (1-50)||(49457341-49457390)
chr3 (1-49)||(5415782-5415830)
chr3 (1-53)||(46672828-46672880)
chr3 (1-48)||(5415895-5415942)
chr3 (1-48)||(37321550-37321597)
chr3 (1-48)||(47767432-47767479)
chr3 (1-51)||(9129341-9129391)
chr3 (1-51)||(9129456-9129506)
chr3 (1-51)||(9137448-9137498)
chr3 (1-51)||(9137563-9137613)
chr3 (1-50)||(27252006-27252055)
chr3 (1-50)||(35279927-35279976)
chr3 (1-50)||(44692934-44692983)
chr3 (1-52)||(7302342-7302393)
chr3 (1-48)||(36398014-36398061)
chr3 (1-48)||(37054394-37054441)
chr3 (1-48)||(44692822-44692869)
chr3 (1-48)||(46429508-46429555)
chr3 (4-50)||(46001362-46001408)
chr3 (1-50)||(671644-671693)
chr3 (1-40)||(21307557-21307596)
chr3 (5-48)||(30767104-30767147)
chr3 (1-48)||(47284338-47284385)
chr3 (3-50)||(53129870-53129917)
chr3 (1-50)||(34088569-34088618)
chr3 (1-46)||(42130694-42130739)
chr3 (5-41)||(19475823-19475859)
[»] chr8 (30 HSPs)
chr8 (1-57)||(32626070-32626126)
chr8 (1-48)||(3853616-3853663)
chr8 (1-48)||(3858074-3858121)
chr8 (1-48)||(14800072-14800119)
chr8 (1-51)||(4156279-4156329)
chr8 (1-51)||(14991689-14991739)
chr8 (1-51)||(42711392-42711442)
chr8 (1-50)||(17110867-17110916)
chr8 (1-58)||(28324698-28324755)
chr8 (3-51)||(27322687-27322735)
chr8 (1-48)||(24044960-24045007)
chr8 (1-48)||(33902667-33902714)
chr8 (3-50)||(36103099-36103146)
chr8 (1-48)||(37268119-37268166)
chr8 (1-46)||(13404829-13404874)
chr8 (3-48)||(29257389-29257434)
chr8 (1-50)||(33377333-33377382)
chr8 (1-50)||(40046802-40046851)
chr8 (1-48)||(17110981-17111028)
chr8 (1-48)||(44889354-44889401)
chr8 (4-46)||(3853731-3853773)
chr8 (4-46)||(3858189-3858231)
chr8 (5-51)||(11744759-11744805)
chr8 (3-48)||(515570-515615)
chr8 (1-38)||(13404939-13404976)
chr8 (13-50)||(14799977-14800014)
chr8 (5-50)||(23011732-23011777)
chr8 (1-46)||(29482843-29482888)
chr8 (1-50)||(33986002-33986051)
chr8 (3-40)||(44346716-44346753)
[»] scaffold0009 (2 HSPs)
scaffold0009 (1-52)||(42090-42141)
scaffold0009 (1-48)||(41997-42044)
[»] chr6 (12 HSPs)
chr6 (1-48)||(9285647-9285694)
chr6 (1-51)||(9763124-9763174)
chr6 (1-50)||(6919819-6919868)
chr6 (3-50)||(28918163-28918210)
chr6 (1-48)||(34245006-34245053)
chr6 (1-50)||(8574777-8574826)
chr6 (8-48)||(33733432-33733472)
chr6 (1-48)||(8574695-8574742)
chr6 (1-48)||(29889460-29889507)
chr6 (1-50)||(776192-776241)
chr6 (1-46)||(6919710-6919755)
chr6 (1-46)||(9763014-9763059)
[»] scaffold1562 (2 HSPs)
scaffold1562 (1-50)||(403-452)
scaffold1562 (1-46)||(517-562)
[»] scaffold1158 (2 HSPs)
scaffold1158 (1-46)||(2031-2076)
scaffold1158 (1-50)||(2141-2190)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-46)||(19200-19245)
[»] scaffold0048 (1 HSPs)
scaffold0048 (1-46)||(82945-82990)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-40)||(56386-56425)
[»] scaffold0400 (1 HSPs)
scaffold0400 (1-47)||(4524-4570)
[»] scaffold0365 (1 HSPs)
scaffold0365 (1-47)||(5168-5214)
[»] scaffold0337 (1 HSPs)
scaffold0337 (7-55)||(15896-15943)
[»] scaffold0065 (1 HSPs)
scaffold0065 (7-55)||(2938-2985)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 48 - 506
Target Start/End: Original strand, 1389513 - 1389955
Alignment:
Q  48 ttaaagaaatagaaaaatgtgattctcacttagcttcagcgccaagaaaatctaatatgtagtgtttttacaaaaataaaattaattctagattatcaat 147  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||    
T  1389513 ttaaagaaatagaaaaatgtgattctcacttagcttcagcaccaagaaaatctaatatgtagtgtttttaaaaaaaaaatattaattctagaatatcaat 1389612  T
Q  148 tatacactaatgggatgtttttagatgaaaaattttgtcaaaatatcacagtcaattgtttcagagttaatagcagtgttactacatacaatacaacaag 247  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |||| |||     ||||    
T  1389613 tatacactaatgggatgtttttagatgaaaaaatttgtcaaaatatcccagtcaattgtttcagagttaatagcagttttaccacatgcaa-----caag 1389707  T
Q  248 ggtttaacatgttggaaaataaaggcatgagtcttgttgatgtcaccactctaaggcattacataatgatttattttcaggttgaaaaattcgaatatta 347  Q
    |||||||||||||||||          ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  1389708 ggtttaacatgttggaa----------tgagtcttgttgatgtcaccactctcaggcattacatattgatttattttcaggctgaaaaattcgaatatta 1389797  T
Q  348 taagcgtctgaaaatgttaatat--taagttgacaaggaataccaagcaataccgtgaagaaataatctccctaattcctagaaaaacaaagaacaattt 445  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  1389798 taagcgtctgaaaatgttaatatattaagttgacaaggaataccatgcaataccgtgaagaaataatctccctaattcctagaaaaaccaagaagaattt 1389897  T
Q  446 gtagtaagtcaggaagaatctaatcatgggagaacgaaagtgtcataaagagtgaaagcta 506  Q
    ||||||||||||||||||||||   |||| |||| ||||||||||||||||||||||||||    
T  1389898 gtagtaagtcaggaagaatcta---atggcagaatgaaagtgtcataaagagtgaaagcta 1389955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23536114 - 23536064
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  23536114 tcaaaacattacattccctcaaaacattcccccatccaaacacactcttaa 23536064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28745844 - 28745799
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  28745844 tcaaaccattacattccctcaaaatattcccccatccaaatacact 28745799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4038187 - 4038234
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  4038187 tcaaaacattactttccctcaaaatattcccccatccaaacacactct 4038234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15034771 - 15034818
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  15034771 tcaaaacattacattccctcaaaacattcccccatccaaacacactct 15034818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30190248 - 30190295
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  30190248 tcaaaacattacattccctcaaaacattcccccatccaaacacactct 30190295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4038122 - 4038072
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  4038122 tcaaaacattacattccctcaaaacattcccccacccaaacacactcttaa 4038072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8224815 - 8224766
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  8224815 tcaaaacattacattccctcaaaacattccctcatccaaacacactctta 8224766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15034706 - 15034657
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  15034706 tcaaaacattacattccctcaaaacattcctccatccaaacacactctta 15034657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26501105 - 26501154
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  26501105 tcaaaacattacattccctcaaaacattcctccatccaaacacactctta 26501154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27935597 - 27935646
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||    
T  27935597 tcaaaacattacattccctcaaaatatttctccatccaaacacactctta 27935646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 38277462 - 38277413
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||||||||||||||||||||| | |||||||| |||||||||    
T  38277462 tcaaaacattacattccctcaaaatattctctcatccaaacacactctta 38277413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40264142 - 40264187
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||    
T  40264142 tcaaaacattacattacctcaaaatattcccccatccaaacacact 40264187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43623004 - 43623053
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||||||    
T  43623004 tcaaaacattacattccatcaaaacattcccccatccaaacacactctta 43623053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 44410356 - 44410311
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||    
T  44410356 aaaacattacattccctcaaaacattctcccatccaaatacactct 44410311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 24273250 - 24273293
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  24273250 aacattacattccctcaaaacattcccccatccaaacacactct 24273293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34756474 - 34756435
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  34756474 tcaaaacattacattccctcaaaacattcccccatccaaa 34756435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32573034 - 32573072
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaa 39  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  32573034 tcaaaacattacattacctcaaaatattcccccatccaa 32573072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44410423 - 44410472
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||| ||||||| |||||||||||||||| ||||||| |||||||||    
T  44410423 tcaaaactttacattacctcaaaatattccccaatccaaacacactctta 44410472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 50005126 - 50005077
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||| |||||||||||||  |||||||| |||||||||    
T  50005126 tcaaaacattacattctctcaaaatattccgtcatccaaacacactctta 50005077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50005191 - 50005236
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||    
T  50005191 tcaaaacattacattacctcaaaatattcctccatccaaacacact 50005236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 27804380 - 27804428
Alignment:
Q  4 aaacattacattccctcaaaatattcccccatccaaatacactcttaaa 52  Q
    |||||||||||| |||||||| ||||| ||||||||| |||||||||||    
T  27804380 aaacattacatttcctcaaaacattcctccatccaaacacactcttaaa 27804428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32287959 - 32288007
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctt 49  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||    
T  32287959 tcaaaacattacattccctcaaaactttcctccatccaaacacactctt 32288007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45565441 - 45565397
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacac 45  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||||    
T  45565441 tcaaaacattacattctctcaaaacattcccccatccaaacacac 45565397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6470712 - 6470759
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||| ||||||| ||||| ||||||||| |||||||    
T  6470712 tcaaaacattacattctctcaaaacattccgccatccaaacacactct 6470759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27804312 - 27804273
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  27804312 tcaaaatattacattccctcaaaacattcccccatccaaa 27804273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 37447928 - 37447967
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  37447928 tcaaaacattacattccctccaaatattcccctatccaaa 37447967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 5474457 - 5474415
Alignment:
Q  8 attacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||| |||||||||||| ||||||||||||||| |||||||||    
T  5474457 attaaattccctcaaaacattcccccatccaaacacactctta 5474415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31166357 - 31166307
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||  ||||||| |||||| |||||||| ||||||||||    
T  31166357 tcaaaacattacattatctcaaaacattccctcatccaaacacactcttaa 31166307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34756539 - 34756589
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    ||||||||||| ||| |||||||||||| ||||||||||| ||||| ||||    
T  34756539 tcaaaacattatattacctcaaaatatttccccatccaaacacactattaa 34756589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44570725 - 44570687
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaa 39  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  44570725 tcaaaacattacattccctcaaaacattctcccatccaa 44570687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 15245495 - 15245458
Alignment:
Q  13 attccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  15245495 attccctcaaaacattcccccatccaaacacactctta 15245458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28632611 - 28632656
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||| ||| |||||| |||||||| |||||    
T  28632611 tcaaaacattacattccctccaaacattccctcatccaaacacact 28632656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29446797 - 29446748
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||||||||| |||||| |||||||| | |||| |||||||||    
T  29446797 tcaaaacattacattccttcaaaacattcccccgttcaaacacactctta 29446748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 34007441 - 34007478
Alignment:
Q  13 attccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  34007441 attccctcaaaatatttccccatccaaacacactctta 34007478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38277527 - 38277571
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||    
T  38277527 tcaaaacattacattacctcaaaatatt-ccccatccaaacacact 38277571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 40264083 - 40264042
Alignment:
Q  13 attccctcaaaatattcccccatccaaatacactcttaaaga 54  Q
    |||||||||||| ||||||| ||||||| |||||||||||||    
T  40264083 attccctcaaaacattcccctatccaaacacactcttaaaga 40264042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37036975 - 37037019
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacac 45  Q
    |||||||||||||||| ||||||| |||||| |||||||| ||||    
T  37036975 tcaaaacattacattcactcaaaacattccctcatccaaacacac 37037019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 242 - 506
Target Start/End: Original strand, 4747164 - 4747422
Alignment:
Q  242 aacaagggtttaacatgttggaaaataaaggcatgagtcttgttgatgtcaccactctaaggcattacataatgatttattttcaggttgaaaaattcga 341  Q
    |||| ||| |||||||||||||||||||||||| |||||||| ||||| ||||||||| || ||||||||   |||| | | | ||||| |||||||| |    
T  4747164 aacatgggcttaacatgttggaaaataaaggca-gagtcttggtgatggcaccactctcagccattacatg--gattgactctgaggttcaaaaattcaa 4747260  T
Q  342 atattataagcgtctgaaaatgttaatattaagttgacaaggaatacc---aagcaataccgtgaagaaataatctccctaattcctagaaaaacaaaga 438  Q
    |||||||||||||| |||||||| |||||||||||||| || ||||||   | |||  ||||||||||||||||||||| ||| || || || ||  | |    
T  4747261 atattataagcgtcagaaaatgtgaatattaagttgacgagaaataccttgaggcaggaccgtgaagaaataatctccccaatccccagcaatacctaca 4747360  T
Q  439 acaatttgtagtaagtcaggaagaatctaatcatgggagaacgaaagtgtcataaagagtgaaagcta 506  Q
    ||| |||   | ||||||| ||| |||||   |||||||||| |||||||||||||||||||||||||    
T  4747361 acagttt---gcaagtcagtaagcatcta---atgggagaacaaaagtgtcataaagagtgaaagcta 4747422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14365747 - 14365697
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  14365747 tcaaaacattacattccctcaaaacattcccccatccaaacacactcttaa 14365697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3092329 - 3092273
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaagaaat 57  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  3092329 tcaaaacaatacattccctcaaaacattcctccatccaaatacactcttagagaaat 3092273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14537246 - 14537198
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctt 49  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  14537246 tcaaaacattacattccctcaaaacattcccccatccaaacacactctt 14537198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27033537 - 27033485
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaag 53  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  27033537 tcaaaacattacattctctcaaaacattcccccatccaaacacactcttaaag 27033485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 784905 - 784952
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  784905 tcaaaacattacattccatcaaaatattcccccatccaaacacactct 784952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41461627 - 41461674
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  41461627 tcaaaacattacattccctcaaaacattcccccatccaaacacactct 41461674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17180344 - 17180294
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  17180344 tcaaaacattacattccctcaaaacattccctcatccaaacacactcttaa 17180294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 10480162 - 10480117
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  10480162 aacattacattccctcaaaacattcccccatccaaacacactctta 10480117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11532279 - 11532324
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  11532279 tcaaaacattacattccctccaaatattcccccatccaaacacact 11532324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11684646 - 11684597
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  11684646 tcaaaacattacattccctcaaaacattcccccatccaaacacattctta 11684597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 11793938 - 11793897
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  11793938 aacattacattccctcaaaatattcccccatccaaacacact 11793897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30698328 - 30698287
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaata 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  30698328 tcaaaacattacattccctcaaaacattcccccatccaaata 30698287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 769081 - 769033
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  769081 aaaacaatacattccctcaaaacattcccccatccaaacacactcttaa 769033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 11141350 - 11141302
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  11141350 aaaacaatacattccctcaaaacattcccccatccaaacacactcttaa 11141302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11716511 - 11716550
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  11716511 tcaaaacattacattccctcaaaacattcccccatccaaa 11716550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14365811 - 14365858
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  14365811 tcaaaacattacattccctcaaaacattcctccatccaaacacactct 14365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 33189285 - 33189332
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  33189285 aaaacaatacattccctcaaaacattcccccatccaaacacactctta 33189332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7228038 - 7228088
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||||||||    
T  7228038 tcaaaacattacattctctcaaaacatttccccatccaaacacactcttaa 7228088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41461562 - 41461508
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaagaa 55  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||| ||| ||||    
T  41461562 tcaaaacattacattacctcaaaatatttccccatccaaacacactattagagaa 41461508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 1583837 - 1583882
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||    
T  1583837 aaaacaatacattccctcaaaacattcccccatccaaacacactct 1583882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10244224 - 10244177
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||| |||||||| ||||||| |||||||||| |||||||    
T  10244224 tcaaaacattactttccctcagaatattctcccatccaaacacactct 10244177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11716455 - 11716408
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  11716455 tcaaaacattacattccctcaaaacattcttccatccaaacacactct 11716408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 784840 - 784791
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| |||   ||||||||| |||||||||    
T  784840 tcaaaacattacattccctcaaaacatttttccatccaaacacactctta 784791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 35047707 - 35047752
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||| |||||| |||||||| ||||||||||||||| |||||||    
T  35047707 aaaacaatacatttcctcaaaacattcccccatccaaacacactct 35047752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44256219 - 44256263
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||    
T  44256219 tcaaaacattacattacctcaaa-tattcccccatccaaacacact 44256263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28740643 - 28740599
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacac 45  Q
    |||||||||||||||||||||||| ||| |||||| |||| ||||    
T  28740643 tcaaaacattacattccctcaaaacatttccccattcaaacacac 28740599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37722917 - 37722964
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  37722917 tcaaaacattacattccctcaaaatattcccccatccaaacacactct 37722964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9764385 - 9764336
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  9764385 tcaaaacattactttccctcaaaatattcccccatccaaacacactctta 9764336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15374072 - 15374121
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15374072 tcaaaacattacattccctcaaaacattcccccatccaaacacactctta 15374121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40643929 - 40643978
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  40643929 tcaaaacattacattccctcaaaacattcccccatccaaacacactctta 40643978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22303893 - 22303940
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  22303893 tcaaaacattacattccctcaaaacattcccccatccaaacacactct 22303940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2316425 - 2316375
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||||||||    
T  2316425 tcaaaatattacattccctcaaaacattcccccatccaaacacactcttaa 2316375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2721583 - 2721628
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  2721583 tcaaaacattacattccctcaaaacattcccccatccaaacacact 2721628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6634062 - 6634013
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  6634062 tcaaaacattacattacctcaaaatatccccccatccaaacacactctta 6634013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13243516 - 13243561
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||    
T  13243516 tcaaaacattacattacctcaaaatattcccccatccaaacacact 13243561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 25935317 - 25935362
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  25935317 aacattacattccctcaaaacattcccccatccaaacacactctta 25935362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28828414 - 28828369
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  28828414 tcaaaacattacattccctcaaaacattcccccatccaaacacact 28828369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32470929 - 32470880
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  32470929 tcaaaacattacattccctcaaaacatttctccatccaaatacactctta 32470880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40090437 - 40090486
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||||||| |||||||| ||||||||||||||| |||||||||    
T  40090437 tcaaaacattacatttcctcaaaacattcccccatccaaacacactctta 40090486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26281292 - 26281344
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaag 53  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||||| ||||    
T  26281292 tcaaaacattacattccctcaaaacgttcccccatccaaacacactctaaaag 26281344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9764450 - 9764497
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  9764450 tcaaaacattacattccctcgaaacattcccccatccaaacacactct 9764497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15804369 - 15804322
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  15804369 tcaaaacactacattccctcaaaacattcccccatccaaacacactct 15804322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22766999 - 22766952
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  22766999 tcaaaacattatattccctcaaaacattcccccatccaaacacactct 22766952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 41762240 - 41762287
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  41762240 aaaacaatacattccctcaaaacattcccccatccaaacacactctta 41762287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3563324 - 3563278
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactc 47  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  3563324 tcaaaacattacattccctcaaaacattcccctatccaaacacactc 3563278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20523245 - 20523291
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactc 47  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  20523245 tcaaaacattacattctctcaaaacattcccccatccaaacacactc 20523291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33245395 - 33245441
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactc 47  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||    
T  33245395 tcaaaacattacattccatcaaaacattcccccatccaaacacactc 33245441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 927349 - 927300
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||| ||||||||||||||| ||| ||||||||||| |||||||||    
T  927349 tcaaaacaatacattccctcaaaacatttccccatccaaacacactctta 927300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15804406 - 15804451
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||    
T  15804406 tcaaaacattacattccctcaaaacatttccccatccaaacacact 15804451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23092074 - 23092123
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||||||||  |||||| ||||||||||||||| |||||||||    
T  23092074 tcaaaacattacattcgttcaaaacattcccccatccaaacacactctta 23092123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28828459 - 28828504
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||    
T  28828459 tcaaaacattacattacctcaaaatatttccccatccaaacacact 28828504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 5658821 - 5658774
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||| ||| | ||||||||| |||||||||    
T  5658821 aaaacattacattccctcaaaacatttctccatccaaacacactctta 5658774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 9894349 - 9894384
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  9894349 aacattacattccctcaaaacattcccccatccaaa 9894384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15374007 - 15373960
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  15374007 tcaaaacattacattccctcaaaaaattcttccatccaaacacactct 15373960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 23092009 - 23091978
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  23092009 tcaaaacattacattccctcaaaatattcccc 23091978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 37145528 - 37145563
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  37145528 aacattacattccctcaaaacattcccccatccaaa 37145563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 22305147 - 22305105
Alignment:
Q  13 attccctcaaaatattcccccatccaaatacactcttaaagaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||    
T  22305147 attccctcaaaacattcccccatccaaacacactcttagagaa 22305105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 2550363 - 2550326
Alignment:
Q  13 attccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  2550363 attccctcaaaacattcccccatccaaacacactctta 2550326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13243506 - 13243469
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatcca 38  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  13243506 tcaaaacattacattccctcaaaacattccctcatcca 13243469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16515130 - 16515179
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||||||||||| |||| |||| | |||||||| |||||||||    
T  16515130 tcaaaacattacattccctaaaaacattctctcatccaaacacactctta 16515179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 19533934 - 19533975
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||| ||||| ||||||||| |||||    
T  19533934 aacattacattccctcaaaacattcctccatccaaacacact 19533975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32250121 - 32250169
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||| ||||||||||| ||| ||||||||||| |||||||||    
T  32250121 tcaaaacattactttccctcaaaacatt-ccccatccaaacacactctta 32250169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32390084 - 32390133
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| |||| |  ||||||| |||||||||    
T  32390084 tcaaaacattacattccctcaaaaaattctctaatccaaacacactctta 32390133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34982262 - 34982214
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||| |||||||||||||| ||||||| ||||||| |||||||||    
T  34982262 tcaaaacat-acattccctcaaaacattcccctatccaaacacactctta 34982214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40809388 - 40809339
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||| |||| ||||||| ||| ||||||||||| |||||||||    
T  40809388 tcaaaacattatattctctcaaaacatttccccatccaaacacactctta 40809339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 20523173 - 20523133
Alignment:
Q  8 attacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||||| |||| |||||||||| |||||||    
T  20523173 attacattccctcaaaacattctcccatccaaacacactct 20523133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1107164 - 1107211
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1107164 tcaaaacattatattccctcaaaatattcccccatccaaatacactct 1107211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41498602 - 41498652
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  41498602 tcaaaacattacattccctcaaaatattcctccatccaaacacactcttaa 41498652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2125904 - 2125857
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||    
T  2125904 tcaaaacaatacattccctcaaaatattcccccatccaaacacactct 2125857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4896695 - 4896648
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  4896695 tcaaaacattacattacctcaaaatattcccccatccaaacacactct 4896648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10128086 - 10128133
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  10128086 tcaaaacattacattctctcaaaacattcccccatccaaatacactct 10128133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11348349 - 11348396
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  11348349 tcaaaacattacattcccttaaaacattcccccatccaaatacactct 11348396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 49111424 - 49111471
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  49111424 tcaaaacattacattccctcaaaacattcccccatccaaacacactct 49111471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4896744 - 4896798
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaagaa 55  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||    
T  4896744 tcaaaacattacattccctcaaaatatttccccatccaaacacactattagagaa 4896798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16516218 - 16516164
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaagaa 55  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||    
T  16516218 tcaaaacattacattccgtcaaaacattcccccatccaaacacactctaaaagaa 16516164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7352859 - 7352814
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  7352859 tcaaaacattacattccctcaaaacattcccccatccaaacacact 7352814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7352924 - 7352973
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  7352924 tcaaaacattacattccctcaaaacatttccccatccaaacacactctta 7352973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15660230 - 15660181
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  15660230 tcaaaacattacattacctcaaaatattcccctatccaaacacactctta 15660181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31742876 - 31742924
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctt 49  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  31742876 tcaaaacattacattccctcaaaacattcctccatccaaacacactctt 31742924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 857351 - 857398
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  857351 tcaaaacattacattccctcaaaacatttccccatccaaacacactct 857398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11041014 - 11040968
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||    
T  11041014 tcaaaacattacattccctcaaaatatt-ccccatccaaacacactct 11040968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14982327 - 14982280
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  14982327 tcaaaacattacattccctcaaaacattcctccatccaaacacactct 14982280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15660295 - 15660342
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||    
T  15660295 tcaaaacattacattccctcaaaacattccctcatccaaacacactct 15660342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 31473892 - 31473849
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  31473892 aacattacattccctcaaaacattcccccatccaaacacactct 31473849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36455954 - 36455907
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  36455954 tcaaaacattagattccctcaaaacattcccccatccaaacacactct 36455907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 1112649 - 1112603
Alignment:
Q  4 aaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||| |||||||| ||||||||||||||| |||||||||    
T  1112649 aaacattacatttcctcaaaacattcccccatccaaacacactctta 1112603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4441384 - 4441338
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactc 47  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  4441384 tcaaaacattacattccctcaaaacattccaccatccaaacacactc 4441338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10128021 - 10127971
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||| ||||    
T  10128021 tcaaaacattacattacttcaaaatattcccccatccaaacacactattaa 10127971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26250956 - 26250911
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||||    
T  26250956 tcaaaacattacattacctcaaaatattccctcatccaaacacact 26250911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36456038 - 36456087
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||| ||||||||||||||||| ||||| ||||||||| |||||||||    
T  36456038 tcaaaatattacattccctcaaaacattcctccatccaaacacactctta 36456087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42542979 - 42543024
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||    
T  42542979 tcaaaacattacattccctcaaaacattccaccatccaaacacact 42543024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42844655 - 42844700
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||    
T  42844655 tcaaaacattacattacctcaaaatatttccccatccaaacacact 42844700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 10633075 - 10633035
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacac 45  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  10633075 aacattacattccctcaaaacattcccccatccaaacacac 10633035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1539688 - 1539649
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  1539688 tcaaaacattacattccctcaaaacattcctccatccaaa 1539649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28845983 - 28846030
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||| |||||||||||| ||| ||||||||||| |||||||    
T  28845983 tcaaaacattatattccctcaaaacatttccccatccaaacacactct 28846030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 14982385 - 14982422
Alignment:
Q  13 attccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  14982385 attccctcaaaagattcccccatccaaacacactctta 14982422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19461762 - 19461807
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||| | |||||||||| ||||||||||| |||||    
T  19461762 tcaaaacattacattacttcaaaatatttccccatccaaaaacact 19461807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 42844590 - 42844541
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||| ||||||||||||||||| ||||||||||| | | |||||||||    
T  42844590 tcaaaatattacattccctcaaaacattcccccatctatacacactctta 42844541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 28845915 - 28845879
Alignment:
Q  4 aaacattacattccctcaaaatattcccccatccaaa 40  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  28845915 aaacattacattccctcaaaacattcctccatccaaa 28845879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40110784 - 40110734
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  40110784 tcaaaacattacattccctcaaaacattcccccatccaaacacactcttaa 40110734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43955564 - 43955515
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  43955564 tcaaaacattacattccctcaaaacattcccccatccaaacacactctta 43955515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2057507 - 2057554
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  2057507 tcaaaacattactttccctcaaaatattcccccatccaaacacactct 2057554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34398961 - 34399008
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34398961 tcaaaacattacattccctcaaaacattcccccatccaaacacactct 34399008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29195756 - 29195706
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  29195756 tcaaaacattacattacctcaaaatattcctccatccaaacacactcttaa 29195706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2057442 - 2057393
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  2057442 tcaaaacattacattcgctcaaaacattcccccatccaaacacactctta 2057393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 31632765 - 31632720
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  31632765 aacattacattccctcaaaacattcccccatccaaacacactctta 31632720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43955626 - 43955671
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  43955626 tcaaaacattacattccctcaaaacattcccccatccaaacacact 43955671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 39342656 - 39342704
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  39342656 aaaacaatacattccctcaaaacattcccccatccaaacacactcttaa 39342704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6498777 - 6498824
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  6498777 tcaaaacattacattccctcaaaacattcctccatccaaacacactct 6498824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 14603276 - 14603323
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  14603276 aaaacaatacattccctcaaaacattcccccatccaaacacactctta 14603323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 26162153 - 26162196
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  26162153 aacattacattccctcaaaacattcccccatccaaacacactct 26162196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28539180 - 28539227
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  28539180 tcaaaacaatacattccctcaaaacattcccccatccaaacacactct 28539227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29065866 - 29065816
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  29065866 tcaaaacattacattccctcaaaacattcatccatccaaacacactcttaa 29065816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 29639231 - 29639281
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactcttaaagaa 55  Q
    ||||||||||||||| |||| ||||||||||||| | ||||||||||||||    
T  29639231 aacattacattccctgaaaacattcccccatccatacacactcttaaagaa 29639281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5644724 - 5644675
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||| |||| |||| |||||||||    
T  5644724 tcaaaacattacattccctcaaaacattcctccattcaaacacactctta 5644675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 21635932 - 21635883
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||||||| ||||||||||||| |||||||||  |||||||||    
T  21635932 tcaaaacattacattacctcaaaatattctcccatccaagcacactctta 21635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 35455849 - 35455804
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||    
T  35455849 aaaacaatacattccctcaaaacattcccccatccaaacacactct 35455804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 35776971 - 35777016
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||| |||||| |||||||| |||||||||    
T  35776971 aacattacattccctcaaaacattccctcatccaaacacactctta 35777016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40110850 - 40110899
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||| ||| ||| ||||||||||| |||||||||    
T  40110850 tcaaaacattacattccctcgaaacatttccccatccaaacacactctta 40110899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5644789 - 5644836
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||| ||||||||  |||||||||||||| |||||||    
T  5644789 tcaaaacattacattacctcaaaacgttcccccatccaaacacactct 5644836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21635997 - 21636036
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  21635997 tcaaaacattacattccctcaaaacatttccccatccaaa 21636036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23548623 - 23548670
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||| ||||||||||||||| ||||| ||||||||| |||||||    
T  23548623 tcaaaacaatacattccctcaaaacattcctccatccaaacacactct 23548670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9784943 - 9784989
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactc 47  Q
    |||||||| ||||||||||||||| ||||| ||||||||| ||||||    
T  9784943 tcaaaacaatacattccctcaaaacattcctccatccaaacacactc 9784989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 31913271 - 31913233
Alignment:
Q  13 attccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  31913271 attccctcaaaacattcccccatccaaacacactcttaa 31913233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 30629102 - 30629065
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  30629102 aaaacaatacattccctcaaaacattcccccatccaaa 30629065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 34388308 - 34388263
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||| || |||||||||||| ||||||||||| |||||||||    
T  34388308 aacattacttttcctcaaaatatttccccatccaaacacactctta 34388263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40854082 - 40854131
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||| |||||||||||||| || ||| ||||||||||| |||||||||    
T  40854082 tcaaaatattacattccctcagaacatttccccatccaaacacactctta 40854131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 44915242 - 44915193
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||| ||||||||||| |||| | |||||||| |||||||||    
T  44915242 tcaaaacattacgttccctcaaaaaattctctcatccaaacacactctta 44915193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29065931 - 29065983
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaag 53  Q
    ||||||||||||||| ||| |||| ||||| ||||||||| ||||||| ||||    
T  29065931 tcaaaacattacattaccttaaaacattcctccatccaaacacactctaaaag 29065983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42005978 - 42006027
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  42005978 tcaaaacattacattccctcaaaacattcccccatccaaacacactctta 42006027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 44436305 - 44436256
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  44436305 tcaaaacattacattccctcaaaacattcccccatccaaacacactctta 44436256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49457390 - 49457341
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  49457390 tcaaaacattacattccctcaaaacattcccccatccaaacacactctta 49457341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5415830 - 5415782
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctt 49  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  5415830 tcaaaacattacattccctcaaaatattcccctatccaaacacactctt 5415782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 46672828 - 46672880
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaag 53  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  46672828 tcaaaacattacattccctcaaaacattcccccatccaaacacactctaaaag 46672880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5415895 - 5415942
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  5415895 tcaaaacattactttccctcaaaatattcccccatccaaacacactct 5415942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37321597 - 37321550
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||    
T  37321597 tcaaaacattacttttcctcaaaatattcccccatccaaatacactct 37321550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 47767479 - 47767432
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  47767479 tcaaaacattacattccctcaaaacattcccccatccaaacacactct 47767432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9129391 - 9129341
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  9129391 tcaaaacattacattccctcaaaatagtctcccatccaaacacactcttaa 9129341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9129456 - 9129506
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  9129456 tcaaaacattacattccctcaaaacattccctcatccaaacacactcttaa 9129506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9137498 - 9137448
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  9137498 tcaaaacattacattccctcaaaatagtctcccatccaaacacactcttaa 9137448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9137563 - 9137613
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  9137563 tcaaaacattacattccctcaaaacattccctcatccaaacacactcttaa 9137613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27252006 - 27252055
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| || |||||||||||| |||||||||    
T  27252006 tcaaaacattacattccctcaaaacatccccccatccaaacacactctta 27252055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35279927 - 35279976
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  35279927 tcaaaacattacattccctcaaaacattcccccatccaaacacattctta 35279976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44692934 - 44692983
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  44692934 tcaaaacattacattccctcaaaacattcctccatccaaacacactctta 44692983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7302393 - 7302342
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaa 52  Q
    |||||||||||||||| ||||||| |||||| |||||||| |||||||||||    
T  7302393 tcaaaacattacattctctcaaaacattccctcatccaaacacactcttaaa 7302342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36398014 - 36398061
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  36398014 tcaaaacaatacattccctcaaaacattcccccatccaaacacactct 36398061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37054441 - 37054394
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  37054441 tcaaaacattacattcccttaaaacattcccccatccaaacacactct 37054394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44692869 - 44692822
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  44692869 tcaaaacattactttccctcaaaacattcccccatccaaacacactct 44692822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 46429508 - 46429555
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||||||    
T  46429508 tcaaaacattacattacctcaaaatattccctcatccaaacacactct 46429555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 46001408 - 46001362
Alignment:
Q  4 aaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||    
T  46001408 aaacattacattacctcaaaatattccgccatccaaacacactctta 46001362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 671644 - 671693
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||| ||||||||||||||| ||||||| ||||||| |||||||||    
T  671644 tcaaaacaatacattccctcaaaacattcccctatccaaaaacactctta 671693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21307557 - 21307596
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  21307557 tcaaaacattacattcccgcaaaacattcccccatccaaa 21307596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 30767147 - 30767104
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||    
T  30767147 aacattagattccctcaaaacattaccccatccaaatacactct 30767104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47284338 - 47284385
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||| ||||||||||||| | |||||||| |||||||    
T  47284338 tcaaaacattacattacctcaaaatattctctcatccaaacacactct 47284385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 53129870 - 53129917
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||| ||| |||||| |||||||| |||||||||    
T  53129870 aaaacattacattccctcgaaacattccctcatccaaacacactctta 53129917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34088618 - 34088569
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||| ||||||||||||||| ||| | ||||||||| |||||||||    
T  34088618 tcaaaacaatacattccctcaaaacatttctccatccaaacacactctta 34088569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42130739 - 42130694
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||  |||||||||||||||||| ||||| |||||    
T  42130739 tcaaaacattacatcacctcaaaatattcccccacccaaacacact 42130694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 19475859 - 19475823
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaat 41  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  19475859 aacattacattccctcaaaacattcctccatccaaat 19475823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32626070 - 32626126
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaagaaat 57  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||||    
T  32626070 tcaaaacattacattccctcaaaagattcccccatccaagcacactcttagagaaat 32626126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3853663 - 3853616
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  3853663 tcaaaacattacattccctcaaaacattcccccatccaaacacactct 3853616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3858121 - 3858074
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  3858121 tcaaaacattacattccctcaaaacattcccccatccaaacacactct 3858074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14800072 - 14800119
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  14800072 tcaaaacattactttccctcaaaatattcccccatccaaacacactct 14800119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4156279 - 4156329
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  4156279 tcaaaacattacattccctcaaaatattctcccatccaaacacactattaa 4156329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14991739 - 14991689
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  14991739 tcaaaacattacattacctcaaaacattcccccatccaaacacactcttaa 14991689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42711392 - 42711442
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||||    
T  42711392 tcaaaacattacattccctcaaaacattccccaatccaaacacactcttaa 42711442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 17110916 - 17110867
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  17110916 tcaaaacattacattccctcaaaacatttccccatccaaacacactctta 17110867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 28324698 - 28324755
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaagaaata 58  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||| | |||||||    
T  28324698 tcaaaacattacattccctcaaaacattcctccatccaaacacactctaagagaaata 28324755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 27322687 - 27322735
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  27322687 aaaacattacattccctcaaaacattctcccatccaaacacactcttaa 27322735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24045007 - 24044960
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||    
T  24045007 tcaaaacattacattccctcaaaacattccctcatccaaacacactct 24044960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33902714 - 33902667
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  33902714 tcaaaacattacattccctcaaaacattcctccatccaaacacactct 33902667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 36103146 - 36103099
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  36103146 aaaacattacattccctcaaaacattcctccatccaaacacactctta 36103099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37268119 - 37268166
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  37268119 tcaaaacattacattacctcaaaatattcccctatccaaacacactct 37268166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13404874 - 13404829
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||    
T  13404874 tcaaaacattacattacctcaaaatatttccccatccaaacacact 13404829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 29257389 - 29257434
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||    
T  29257389 aaaacaatacattccctcaaaacattcccccatccaaacacactct 29257434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 33377333 - 33377382
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||| || |||||||||||| ||||||||||||||| |||||||||    
T  33377333 tcaaaacaatatattccctcaaaacattcccccatccaaacacactctta 33377382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40046851 - 40046802
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| ||||  ||||||||| |||||||||    
T  40046851 tcaaaacattacattccctcaaaacattcatccatccaaacacactctta 40046802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17110981 - 17111028
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||| | ||||||||| |||||||    
T  17110981 tcaaaacattacattccctcaaaacatttctccatccaaacacactct 17111028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44889401 - 44889354
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||| |||||||||||| ||||| ||||||||| |||||||    
T  44889401 tcaaaacattatattccctcaaaacattcctccatccaaacacactct 44889354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 3853731 - 3853773
Alignment:
Q  4 aaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||| |||||||||||| ||||||||||| |||||    
T  3853731 aaacattacattacctcaaaatatttccccatccaaacacact 3853773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 3858189 - 3858231
Alignment:
Q  4 aaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||| |||||||||||| ||||||||||| |||||    
T  3858189 aaacattacattacctcaaaatatttccccatccaaacacact 3858231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 11744759 - 11744805
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    |||||||||||||||| |||||||| | |||||||| ||||||||||    
T  11744759 aacattacattccctctaaatattctctcatccaaacacactcttaa 11744805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 515570 - 515615
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||| |||||| ||||| ||||||||| |||||||    
T  515570 aaaacattacattccttcaaaacattcctccatccaaacacactct 515615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13404939 - 13404976
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatcca 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  13404939 tcaaaacattacattccctcaaaacattcccctatcca 13404976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 14800014 - 14799977
Alignment:
Q  13 attccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  14800014 attccctcaaaacattcccccatccaaacacactctta 14799977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 23011777 - 23011732
Alignment:
Q  5 aacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||| |||| ||| |||||| |||||||||    
T  23011777 aacattacattccctcaaaacattctcccgtccaaacacactctta 23011732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29482843 - 29482888
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||| ||| ||||||||||| ||||||||||||||| |||||    
T  29482843 tcaaaacaatacgttccctcaaaacattcccccatccaaacacact 29482888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33986051 - 33986002
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    ||||||||||||||| | |||| | ||||||||||||||| |||||||||    
T  33986051 tcaaaacattacattacttcaagacattcccccatccaaacacactctta 33986002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 44346716 - 44346753
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  44346716 aaaacaatacattccctcaaaacattcccccatccaaa 44346753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42090 - 42141
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaaa 52  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  42090 tcaaaacattacattccctcaaaacgttcccccatccaaacacactcttaaa 42141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42044 - 41997
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||| |||| |||| |||||||    
T  42044 tcaaaacattacattccctcaaaacattcctccattcaaacacactct 41997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9285694 - 9285647
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  9285694 tcaaaacattacattccctcaaaacattcccccatccaaacacactct 9285647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9763124 - 9763174
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactcttaa 51  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  9763124 tcaaaacattacattacctcaaaatattcctccatccaaacacactcttaa 9763174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6919819 - 6919868
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  6919819 tcaaaacattactttccctcaaaacattcccccatccaaacacactctta 6919868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 28918210 - 28918163
Alignment:
Q  3 aaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  28918210 aaaacattacattccctcaaaacattcctccatccaaacacactctta 28918163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34245006 - 34245053
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  34245006 tcaaaacattacattccctcaaaacattcctccatccaaacacactct 34245053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8574777 - 8574826
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||| ||||||| ||| ||||||||||| |||||||||    
T  8574777 tcaaaacattacattcactcaaaacatttccccatccaaacacactctta 8574826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 33733472 - 33733432
Alignment:
Q  8 attacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  33733472 attacattccctcaaaacattcccccatccaaacacactct 33733432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8574742 - 8574695
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    |||||||||||||||| ||||||| ||| ||||||||||| |||||||    
T  8574742 tcaaaacattacattcactcaaaacatttccccatccaaacacactct 8574695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29889460 - 29889507
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactct 48  Q
    ||||||||||||||||| |||||| ||||| ||||||||| |||||||    
T  29889460 tcaaaacattacattccatcaaaacattcctccatccaaacacactct 29889507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 776192 - 776241
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||||||||||||||| |||  || ||||||| |||||||||    
T  776192 tcaaaacattacattccctcaaaacattttcctatccaaacacactctta 776241  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6919755 - 6919710
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||  ||||| ||||||||| |||||    
T  6919755 tcaaaacattacattccctcaaaccattcctccatccaaacacact 6919710  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9763059 - 9763014
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||| ||| |||| |||||| |||||    
T  9763059 tcaaaacattacattccctcaaaacatttccccttccaaacacact 9763014  T

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Target: scaffold1562 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 452 - 403
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  452 tcaaaacattattttccctcaaaatattcccccatccaaacacactctta 403  T

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Target: scaffold1562; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 517 - 562
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  517 tcaaaacattacattccctcaaaacattcccccatccaaacacact 562  T

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Target: scaffold1158 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2076 - 2031
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  2076 tcaaaacattacattccctcaaaacattcccccatccaaacacact 2031  T

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Target: scaffold1158; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2141 - 2190
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactctta 50  Q
    |||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  2141 tcaaaacattattttccctcaaaatattcccccatccaaacacactctta 2190  T

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Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19245 - 19200
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||    
T  19245 tcaaaacattacattccctcaaaatactcccccatccaaacacact 19200  T

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Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 82990 - 82945
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacact 46  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||    
T  82990 tcaaaacattacattccctcaaaacattcacccatccaaacacact 82945  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 56386 - 56425
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaa 40  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  56386 tcaaaacattactttccctcaaaatattccctcatccaaa 56425  T

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Target: scaffold0400 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4524 - 4570
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactc 47  Q
    ||||||||||| |||||||||||| |||||| |||||||| ||||||    
T  4524 tcaaaacattatattccctcaaaacattccctcatccaaacacactc 4570  T

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Target: scaffold0365 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5168 - 5214
Alignment:
Q  1 tcaaaacattacattccctcaaaatattcccccatccaaatacactc 47  Q
    ||||||||||| |||||||||||| |||||| |||||||| ||||||    
T  5168 tcaaaacattatattccctcaaaacattccctcatccaaacacactc 5214  T

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Target: scaffold0337 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 15896 - 15943
Alignment:
Q  7 cattacattccctcaaaatattcccccatccaaatacactcttaaagaa 55  Q
    |||||||||||| ||||| | ||||||||||||| ||||||||||||||    
T  15896 cattacattccc-caaaacaatcccccatccaaacacactcttaaagaa 15943  T

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Target: scaffold0065 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 2938 - 2985
Alignment:
Q  7 cattacattccctcaaaatattcccccatccaaatacactcttaaagaa 55  Q
    |||||||||||| ||||| | ||||||||||||| ||||||||||||||    
T  2938 cattacattccc-caaaacaatcccccatccaaacacactcttaaagaa 2985  T

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