View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11993_low_5 (Length: 472)
Name: NF11993_low_5
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11993_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 78 - 282
Target Start/End: Complemental strand, 29461987 - 29461783
Alignment:
| Q |
78 |
tgaggatctcaaacaatgaatggaaacaaaacaattcataccaagattctttctttagctagtcacaggtcaactcttaaactgacacacagcacacatt |
177 |
Q |
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| T |
29461987 |
tgaggatctcaaacaatgaatggaaacaaaacaattcataccaagattctttctttagctagtcacaggtcaactcttaaactgacacacagcacacatt |
29461888 |
T |
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| Q |
178 |
tatcaataataatctgccacttcttataacaacacacacatcgtatctatttcttctattggatctataaaacaaccttaggcacaaggaatggcagtca |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461887 |
tatcaataataatctgccacttcttataacaacacacacatcgtatctatttcttctattggatctataaaacaaccttaggcacaaggaatggcagtca |
29461788 |
T |
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| Q |
278 |
aagtc |
282 |
Q |
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||||| |
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| T |
29461787 |
aagtc |
29461783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 283 - 467
Target Start/End: Complemental strand, 29457149 - 29456965
Alignment:
| Q |
283 |
tacagcagaaaaggaataatagtccacattatgatattacaatataaaacataccttgtagaaaaaatatcataatttttagtctgagcacgtattcaag |
382 |
Q |
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| T |
29457149 |
tacagcagaaaaggaataatagtccacattatgatattacaacataaaacataccttgtagaaaaaatatcataatttttagtctgagcacgtattcaag |
29457050 |
T |
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| Q |
383 |
acatgatnnnnnnngggtgtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaatttatgcagtacctttgcttct |
467 |
Q |
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| T |
29457049 |
acatgataaaaaaagggtgtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaatttatgcagtacctttgcttct |
29456965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 29462547 - 29462487
Alignment:
| Q |
21 |
tctggtatccgatcttcaatttcttttttcttcatcttcaatattctattctggctctgag |
81 |
Q |
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| T |
29462547 |
tctggtatccgatcttcaatttcttttttcttcatcttcaatattctattctggctctgag |
29462487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 29449223 - 29449134
Alignment:
| Q |
263 |
aaggaatggcagtcaaagtctacagcagaaaaggaataatagtccacattatgatattacaatataaaacataccttgtagaaaaaatat |
352 |
Q |
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|||| |||||| ||||||||||||||| ||||||| ||| ||||||| |||||||||||||| ||||||| || ||||||||||||||| |
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| T |
29449223 |
aagggatggcattcaaagtctacagcataaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatat |
29449134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 448
Target Start/End: Complemental strand, 29449109 - 29449062
Alignment:
| Q |
401 |
gtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt |
448 |
Q |
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| T |
29449109 |
gtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt |
29449062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 9295337 - 9295291
Alignment:
| Q |
88 |
aaacaatgaatggaaacaaaacaattcataccaagattctttcttta |
134 |
Q |
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|||||||||||||||| ||| ||||||||||||| |||||||||||| |
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| T |
9295337 |
aaacaatgaatggaaaaaaagcaattcataccaaaattctttcttta |
9295291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 9363406 - 9363454
Alignment:
| Q |
33 |
tcttcaatttcttttttcttcatcttcaatattctattctggctctgag |
81 |
Q |
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||||||||||| ||||||||||||| | |||||||||||||||| |||| |
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| T |
9363406 |
tcttcaatttcctttttcttcatctaccatattctattctggctttgag |
9363454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 9061854 - 9061803
Alignment:
| Q |
83 |
atctcaaacaatgaatggaaacaaaa-caattcataccaagattctttcttta |
134 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| |||| ||||||| |
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| T |
9061854 |
atctcaaacaatgaatg-aaacaaaagcaattcataccaaaattcgttcttta |
9061803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 9068723 - 9068672
Alignment:
| Q |
82 |
gatctcaaacaatgaatggaaacaaaacaattcataccaagattctttcttta |
134 |
Q |
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||||||||| |||||||| ||| ||| ||||||||||||| |||||||||||| |
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| T |
9068723 |
gatctcaaagaatgaatgaaaa-aaagcaattcataccaaaattctttcttta |
9068672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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