View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11993_low_6 (Length: 434)
Name: NF11993_low_6
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11993_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 10195848 - 10196253
Alignment:
| Q |
15 |
atgaacattcttattatgtaaactacctaaaaattatgccatttgatttgagataagaagagagagagatatgattatatacctgacatgttggtaacag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10195848 |
atgaacattcttattatgtaaactacctaaaaattatgccatttgatttgagataagaagagagagagatatgattatatacctgacatgttggtaacag |
10195947 |
T |
|
| Q |
115 |
aattccgaactcttctttcacagccatcacagtccattttcacctttatttcaactgtctataagagnnnnnnnnnnnnnnnnnnnnnntcagaattttc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10195948 |
aattccgaactcttctttcacagccatcacagtccattttcacctttatttcaactgtctataagagaaaaaagttgcaaaaaataaaatcagaattttc |
10196047 |
T |
|
| Q |
215 |
ttaagactaataagctcactattaatgagataggatacataggagctagtgaaaaacctgcatgggtttgtgtttcttttttggggtgacagtgaagtaa |
314 |
Q |
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| T |
10196048 |
ttaagactaataagctcactattaatgagataggatacataggagctagtgaaaaacctgcatgggtttgtgtttcttttttggggtgacagtgaagtaa |
10196147 |
T |
|
| Q |
315 |
tctgaaaggaaatctagagcacccattttcttatttcttgctcnnnnnnngtgtaaagaaagaaatggattgggttagtacttgaaaagaaaaaggatga |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10196148 |
tctgaaaggaaatctagagcacccattttcttatttcttgctctttttttgtgtaaagaaagaaatggattgggttagtacttgaaaagaaaaaggatgg |
10196247 |
T |
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| Q |
415 |
aaaagg |
420 |
Q |
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|||||| |
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| T |
10196248 |
aaaagg |
10196253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 10651177 - 10651113
Alignment:
| Q |
110 |
aacagaattccgaactcttctttcacagccatcacagtccattttcacctttatttcaactgtct |
174 |
Q |
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| T |
10651177 |
aacagaattcctaactcttctttcacatccatcacagtccattttcaccttgatttcaaccgtct |
10651113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 31886871 - 31886816
Alignment:
| Q |
123 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtctataa |
178 |
Q |
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| T |
31886871 |
actcttctttcacacccatcacaatccattttgactttgatctcaactgtctataa |
31886816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 54328 - 54277
Alignment:
| Q |
123 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtct |
174 |
Q |
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|||||||||||||| ||||||||||||||| |||| ||||| ||||| |||| |
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| T |
54328 |
actcttctttcacaaccatcacagtccattctcacttttatctcaaccgtct |
54277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 2306684 - 2306629
Alignment:
| Q |
123 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtctataa |
178 |
Q |
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|||||||||||||| |||||||| |||||||| || || || |||||||||||||| |
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| T |
2306684 |
actcttctttcacacccatcacaatccattttgactttgatctcaactgtctataa |
2306629 |
T |
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