View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11993_low_8 (Length: 386)

Name: NF11993_low_8
Description: NF11993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11993_low_8
NF11993_low_8
[»] chr3 (3 HSPs)
chr3 (19-359)||(10074075-10074414)
chr3 (19-91)||(10136126-10136199)
chr3 (19-75)||(10356479-10356536)
[»] chr2 (4 HSPs)
chr2 (29-360)||(36091742-36092081)
chr2 (283-360)||(29783284-29783361)
chr2 (21-166)||(29783014-29783159)
chr2 (33-172)||(31699572-31699711)
[»] scaffold0069 (2 HSPs)
scaffold0069 (29-183)||(65312-65466)
scaffold0069 (277-360)||(65569-65652)
[»] chr1 (2 HSPs)
chr1 (29-183)||(20386703-20386857)
chr1 (277-360)||(20386960-20387043)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 10074075 - 10074414
Alignment:
Q  19 tggacaaattacagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggtt 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10074075 tggacaaattacagttcatgaataaatgttccacagtctctgcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgttggtt 10074174  T
Q  119 atgtctagttgggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattggtgct------------ttccatagtctttcgttc 206  Q
     |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||            ||||||||||||||||||    
T  10074175 gtgtctatttgggagaatgttctttgccaagcgccacatgaagtttttgatcttgttggggattggtgctttgcaaatttcattccatagtctttcgttc 10074274  T
Q  207 ctgtgatgggatggtccgggctggagattttctttgattttgttcaa-aagaggtatgctgatctgatctgacagtgtagcaaccatttttctcccagtg 305  Q
    ||| | |||||||||||  |||| ||||||||| ||||| || |||| ||| ||||||||              |||||||||||||||||||||||| |    
T  10074275 ctgcgttgggatggtcctagctgaagattttctctgattctgctcaataagtggtatgct--------------gtgtagcaaccatttttctcccagcg 10074360  T
Q  306 ccagcaaatcttgtcttttggaagggattgggatataggaatacttacaatttt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10074361 ccagcaaatcttgtcttttggaagggattgggatataggaatacttacaatttt 10074414  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 10136126 - 10136199
Alignment:
Q  19 tggacaaattacagttcatgaa-taaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtc 91  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  10136126 tggacaaattacagttcatcaaataaatgtgccacagtctcagcttcagaatgacataaagggccggaggtgtc 10136199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 10356536 - 10356479
Alignment:
Q  19 tggacaaattacagttcatgaa-taaatgttccacagtctcagcttcagaatgacata 75  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  10356536 tggacaaattacagttcatcaaataaatgttccacagtctcagcttcagaatgacata 10356479  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 29 - 360
Target Start/End: Complemental strand, 36092081 - 36091742
Alignment:
Q  29 acagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagtt 128  Q
    |||||||||||||| |||||||||||| ||  | |||| |||||||| ||||||  | ||||| ||   ||||||||||||||| || || || ||||||    
T  36092081 acagttcatgaatagatgttccacagtttccacatcagcatgacatatagggcataaagtgtcgagggaaatacctttcctctgcagattttgcctagtt 36091982  T
Q  129 gggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattggtg------------ctttccatagtctttcgttcctgtgatggg 216  Q
    ||||| ||||||||||||||||||||||||||||| || | ||||||||| |||| ||            | ||||||||||| ||||||||||| ||||    
T  36091981 gggaggatgttctttgccaagcgccacatgaagttcttcaccttgttgggaattgatgccttccaaatttccttccatagtctctcgttcctgtggtggg 36091882  T
Q  217 atggtccgggctggagattttctttgattttgttcaa-aagaggtatgctgatctgatctgacagtgtagcaaccatttttctcccagtgccagcaaatc 315  Q
    | || || || ||||| |||||| | || ||| |||| ||| | || |     |||| ||||||||||| ||||||||||||||||| ||||||||  |     
T  36091881 acggccctggttggaggttttctctaatcttgctcaataagtgatagg-----ctgacctgacagtgtaacaaccatttttctcccaatgccagcatctt 36091787  T
Q  316 ttgtcttttggaagggattgggatataggaatacttacaattttt 360  Q
    |||||||| || || ||||| |||| ||| ||||| |||||||||    
T  36091786 ttgtctttggggagagattgtgatagagggatactcacaattttt 36091742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 29783284 - 29783361
Alignment:
Q  283 tagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaattttt 360  Q
    ||||| |||| ||||||||| ||||||||||| || ||| | |||||||| || |||||||| |||||||||||||||    
T  29783284 tagcagccatctttctcccaatgccagcaaattttatctctaggaagggaatgtgatatagggatacttacaattttt 29783361  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 29783014 - 29783159
Alignment:
Q  21 gacaaattacagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttat 120  Q
    ||||| ||||||||||| ||||| ||||||||||| ||  | |||||||||||||| |||||  | |  || |     ||||||||| | ||||| |  |    
T  29783014 gacaagttacagttcataaataagtgttccacagtttccacatcagaatgacataacgggcataaaggatccaaggatatacctttcttttgtagatcgt 29783113  T
Q  121 gtctagttgggagaatgttctttgccaagcgccacatgaagttttt 166  Q
    | || |||||||| |||||||||||||| |||||||||||||||||    
T  29783114 gcctggttgggaggatgttctttgccaaacgccacatgaagttttt 29783159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 31699711 - 31699572
Alignment:
Q  33 ttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagttggga 132  Q
    |||||||| ||||||||| |||| || | |||||| |||||  | ||||| |||||||| ||| |||||||||| || || || ||   ||| |||||||    
T  31699711 ttcatgaacaaatgttccgcagtttcggtttcagagtgacaagaggggcaagaggtgtcaagagcaataccttttctttgcagattggatcttgttggga 31699612  T
Q  133 gaatgttctttgccaagcgccacatgaagttttttatctt 172  Q
    | || ||||| ||||  ||||||||||| ||||| |||||    
T  31699611 ggatattcttagccagccgccacatgaaatttttaatctt 31699572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 65312 - 65466
Alignment:
Q  29 acagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagtt 128  Q
    |||||||||||| | |||||||||||| ||  | |||| |||||||| ||||||  | ||||| |||  ||||||||||||||| || || || ||||||    
T  65312 acagttcatgaaaagatgttccacagtttccacatcagcatgacatatagggcataaagtgtcgagagaaatacctttcctctgcagattttgcctagtt 65411  T
Q  129 gggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattg 183  Q
    ||||| |||||||||||||||| |||||||||||| || | ||||||||| ||||    
T  65412 gggaggatgttctttgccaagcaccacatgaagttcttcaccttgttgggaattg 65466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 360
Target Start/End: Original strand, 65569 - 65652
Alignment:
Q  277 acagtgtagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaattttt 360  Q
    |||||||| ||||||||||||||||| ||||| || || |||||||| || || |||||||| | ||| ||||| |||||||||    
T  65569 acagtgtaacaaccatttttctcccaatgccaacatattttgtctttggggagagattgggagagagggatactcacaattttt 65652  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 20386703 - 20386857
Alignment:
Q  29 acagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagtt 128  Q
    |||||||||||| | |||||||||||| ||  | |||| |||||||| ||||||  | ||||| |||  ||||||||||||||| || || || ||||||    
T  20386703 acagttcatgaaaagatgttccacagtttccacatcagcatgacatatagggcataaagtgtcgagagaaatacctttcctctgcagattttgcctagtt 20386802  T
Q  129 gggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattg 183  Q
    ||||| |||||||||||||||| |||||||||||| || | ||||||||| ||||    
T  20386803 gggaggatgttctttgccaagcaccacatgaagttcttcaccttgttgggaattg 20386857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 360
Target Start/End: Original strand, 20386960 - 20387043
Alignment:
Q  277 acagtgtagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaattttt 360  Q
    |||||||| ||||||||||||||||| ||||| || || |||||||| || || |||||||| | ||| ||||| |||||||||    
T  20386960 acagtgtaacaaccatttttctcccaatgccaacatattttgtctttggggagagattgggagagagggatactcacaattttt 20387043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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