View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11994_high_1 (Length: 604)
Name: NF11994_high_1
Description: NF11994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11994_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 105 - 575
Target Start/End: Complemental strand, 3480210 - 3479737
Alignment:
| Q |
105 |
gcagaacctgtgtttagcaaggcaggagaaacaattggagtaggcaatgag---atggaaataaccgatcaggtaaaaattgttattttgcttttcgaag |
201 |
Q |
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| T |
3480210 |
gcagaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttgctttttgaag |
3480111 |
T |
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| Q |
202 |
ttacttgcattgtcttaaaattttggttgggcttaactcatccaatgtaaggtgtgagctgctccgacttattataaacaaatttacaagcaatatctca |
301 |
Q |
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| T |
3480110 |
ttacttgcattgtcttaaaattttggttgggcttaactcatccaatgtaaggtgtgagctgccccgacttattataaacaaatttacaagcaatatctca |
3480011 |
T |
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| Q |
302 |
tccaatgtgatctatgaagtgtgactcgagtgacccgatatcaggccactaaggtcacgctttagatatctagtcgtgggcgtgaatatgtgtttataag |
401 |
Q |
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| T |
3480010 |
tccaatgtgatctatgaagtgtgactcgagtgacccgatatcaggccactaaggtcactctttagatatctagtcgtgggcgtgaatatgtgtttataag |
3479911 |
T |
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| Q |
402 |
tgggggatgtcttaaccttataagtcttcactaaattctaatacatttcaatcttgtttttgtgaaaataatatttataatttcgaaaaacaattgcagg |
501 |
Q |
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| T |
3479910 |
tgggggatgtcttaaccttataagtcttcaccaaattctaatacatttcaatcttgtttttgtgaaaataatatttataattttgaaaaacaattgcagg |
3479811 |
T |
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| Q |
502 |
tgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaagcaaaggaaacagaacttaat |
575 |
Q |
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| T |
3479810 |
tgagaaaaagagaaaaaatggcaaagctaagggaagaaattgcagttcagaaagcaaaggaaacagaacttaat |
3479737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 455 - 575
Target Start/End: Complemental strand, 3455490 - 3455372
Alignment:
| Q |
455 |
ttgtttttgtgaaaataatatttataatttcgaaaaacaattgcaggtgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaa |
554 |
Q |
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||||| ||||||| | |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455490 |
ttgttcttgtgaagaaaatatttataatatcaaaaaa--atcgcaggtgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaa |
3455393 |
T |
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| Q |
555 |
gcaaaggaaacagaacttaat |
575 |
Q |
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| T |
3455392 |
gcaaaggaaacagaacttaat |
3455372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 3455606 - 3455519
Alignment:
| Q |
107 |
agaacctgtgtttagcaaggcaggagaaacaattggagtaggcaat---gagatggaaataaccgatcaggtaaaaattgttattttg |
191 |
Q |
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| T |
3455606 |
agaacctgtgtttagcaaggcaggtgaaacaattggagtaaactatatgggaatggaaataacagatcaggtaaatattgttattttg |
3455519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 3855632 - 3855672
Alignment:
| Q |
30 |
gataggaggctgtctgtcaaagataaaggacttcgccattg |
70 |
Q |
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| T |
3855632 |
gataggaggctgtctgtcaaagataaaggacttcgccattg |
3855672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 499 - 571
Target Start/End: Original strand, 48694965 - 48695037
Alignment:
| Q |
499 |
aggtgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaagcaaaggaaacagaact |
571 |
Q |
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| T |
48694965 |
aggttagaaaaagagaaaggatggcgaagattcgcgaagagattgctgttcagaaagcaaaggaaacagaact |
48695037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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