View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11994_high_3 (Length: 427)
Name: NF11994_high_3
Description: NF11994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11994_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 115 - 400
Target Start/End: Original strand, 33756985 - 33757270
Alignment:
| Q |
115 |
gtgaaagttagttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacagccacca |
214 |
Q |
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| T |
33756985 |
gtgaaagtttgttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacaaccacca |
33757084 |
T |
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| Q |
215 |
ctcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcaatgttatttccaatacaccaattcgaaccactttta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33757085 |
ctcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcaatgttatttccaatacaccaattcgaaccactttta |
33757184 |
T |
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| Q |
315 |
atgctttcactctcttcatgattaataaacattcttctcaatcacaatcaccgtcaccgtcacagtcatttccgttaccgtcacag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
33757185 |
atgctttcactctcttcatgattaataaacattcttctcaatcacaatcaccgtcacagtcacagtcatttccattaccgtcacag |
33757270 |
T |
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