View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11994_high_8 (Length: 318)

Name: NF11994_high_8
Description: NF11994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11994_high_8
NF11994_high_8
[»] chr8 (2 HSPs)
chr8 (11-260)||(14995221-14995470)
chr8 (254-290)||(22732207-22732243)
[»] chr4 (14 HSPs)
chr4 (11-260)||(41860614-41860863)
chr4 (11-260)||(52681467-52681716)
chr4 (12-127)||(30576573-30576688)
chr4 (103-257)||(15056967-15057124)
chr4 (78-124)||(47964110-47964156)
chr4 (254-290)||(41861939-41861975)
chr4 (254-290)||(41862030-41862066)
chr4 (254-290)||(41862121-41862157)
chr4 (254-290)||(41862212-41862248)
chr4 (254-290)||(41862403-41862439)
chr4 (254-290)||(41946638-41946674)
chr4 (254-290)||(41946729-41946765)
chr4 (254-290)||(52680359-52680395)
chr4 (254-290)||(53285696-53285732)
[»] chr3 (15 HSPs)
chr3 (11-260)||(26950254-26950503)
chr3 (11-260)||(36092544-36092793)
chr3 (11-260)||(18200483-18200732)
chr3 (36-122)||(12807577-12807663)
chr3 (29-116)||(14458470-14458557)
chr3 (254-290)||(854976-855012)
chr3 (254-290)||(6953291-6953327)
chr3 (254-290)||(6953430-6953466)
chr3 (254-290)||(6953812-6953848)
chr3 (254-290)||(18199352-18199388)
chr3 (254-290)||(36093873-36093909)
chr3 (254-290)||(36093964-36094000)
chr3 (254-290)||(36947725-36947761)
chr3 (254-290)||(36947864-36947900)
chr3 (254-290)||(36948003-36948039)
[»] chr7 (11 HSPs)
chr7 (11-260)||(22005714-22005963)
chr7 (11-260)||(7892490-7892739)
chr7 (11-261)||(3598991-3599241)
chr7 (29-122)||(13604170-13604262)
chr7 (254-290)||(3600149-3600185)
chr7 (254-290)||(5090967-5091003)
chr7 (254-290)||(7891382-7891418)
chr7 (254-290)||(13927440-13927476)
chr7 (254-290)||(22004323-22004359)
chr7 (254-290)||(22004514-22004550)
chr7 (254-290)||(22004605-22004641)
[»] chr5 (7 HSPs)
chr5 (11-260)||(32674006-32674255)
chr5 (64-260)||(22636691-22636891)
chr5 (29-122)||(21122329-21122422)
chr5 (254-290)||(20844506-20844542)
chr5 (254-290)||(23179540-23179576)
chr5 (254-290)||(23179631-23179667)
chr5 (254-290)||(32672891-32672927)
[»] chr2 (9 HSPs)
chr2 (11-260)||(13906996-13907245)
chr2 (11-260)||(26454641-26454890)
chr2 (11-260)||(40604478-40604727)
chr2 (254-290)||(32287325-32287361)
chr2 (254-290)||(13899908-13899944)
chr2 (254-290)||(13905806-13905842)
chr2 (254-290)||(26453534-26453570)
chr2 (254-290)||(35433139-35433175)
chr2 (254-290)||(40603369-40603405)
[»] chr6 (1 HSPs)
chr6 (11-260)||(3590335-3590584)
[»] chr1 (7 HSPs)
chr1 (11-260)||(35595691-35595940)
chr1 (11-260)||(2045990-2046239)
chr1 (254-290)||(2051974-2052010)
chr1 (254-290)||(39514207-39514243)
chr1 (254-290)||(45507254-45507290)
chr1 (254-290)||(45507403-45507439)
chr1 (254-290)||(49791612-49791648)
[»] scaffold0121 (3 HSPs)
scaffold0121 (254-290)||(41422-41458)
scaffold0121 (254-290)||(41240-41276)
scaffold0121 (254-290)||(41331-41367)
[»] scaffold0160 (1 HSPs)
scaffold0160 (254-290)||(36132-36168)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 14995221 - 14995470
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995221 caattcaaacagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 14995320  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995321 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 14995420  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14995421 gaatggaaagaaagatgtgtggttaaccttagtcacaaaaaagaggagga 14995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 22732207 - 22732243
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22732207 aggaggagtgaaattaggaaatcatggttagggtttg 22732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 41860614 - 41860863
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860614 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 41860713  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860714 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 41860813  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  41860814 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 41860863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 52681716 - 52681467
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  52681716 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaattgcaa 52681617  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52681616 aatcaacaaactaaaccccacaccaattatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaatt 52681517  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  52681516 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 52681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 30576573 - 30576688
Alignment:
Q  12 aattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaa 111  Q
    |||||||||| || ||| |||||||||||| ||||||| || |||||||| |||| | |||||||||||||| | | |||| ||||| ||  ||||||||    
T  30576573 aattcaaaaactcgtcgaattacaaataacaaaaaatccaattaaacaaaagctcttgctcttattccaaccgccattttggaaatttctctactgcaaa 30576672  T
Q  112 atcaacaaaccaaacc 127  Q
    || |||||||||||||    
T  30576673 atgaacaaaccaaacc 30576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 103 - 257
Target Start/End: Complemental strand, 15057124 - 15056967
Alignment:
Q  103 aactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtac 198  Q
    |||| ||||||||||| ||||||||  ||| |||||||||    ||||||||| ||||||||  |||||  |||| |||||||||||| |||||||| ||    
T  15057124 aactccaaaatcaacataccaaacct-acaacaatcatatgaacaacaattacgttgattttaaaagaaatctaagaagctattgcaatctattttgaac 15057026  T
Q  199 aatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagagga 257  Q
    || | |||||||||| |  || ||||||  |||||||| ||| ||||| ||||||||||    
T  15057025 aacaaaggaattgaaagagaataaagatacgtggttaaacttggtcacgaagaagagga 15056967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 47964110 - 47964156
Alignment:
Q  78 ccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 124  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||||||    
T  47964110 ccaacccctaatttgaaaattcataaactgtaaaatcaacaaaccaa 47964156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 41861939 - 41861975
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41861939 aggaggagggaaattaggaaatcatggttagggtttg 41861975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 41862030 - 41862066
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862030 aggaggagggaaattaggaaatcatggttagggtttg 41862066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 41862121 - 41862157
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862121 aggaggagggaaattaggaaatcatggttagggtttg 41862157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 41862212 - 41862248
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862212 aggaggagggaaattaggaaatcatggttagggtttg 41862248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 41862403 - 41862439
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862403 aggaggagggaaattaggaaatcatggttagggtttg 41862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 41946638 - 41946674
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946638 aggaggagggaaattaggaaatcatggttagggtttg 41946674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 41946729 - 41946765
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946729 aggaggagggaaattaggaaatcatggttagggtttg 41946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 52680395 - 52680359
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  52680395 aggaggagggaaattaggaaatcatggttagggtttg 52680359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 53285732 - 53285696
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  53285732 aggaggagtgaaattaggaaatcatggttagggtttg 53285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 26950503 - 26950254
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950503 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 26950404  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950403 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 26950304  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  26950303 gaatgcaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26950254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 36092544 - 36092793
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36092544 caattcaaaaagtcatcagattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcatgaactgcaa 36092643  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092644 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 36092743  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  36092744 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 36092793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 18200732 - 18200483
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  18200732 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctattcttattccaaccccaaatttgaaaattcctgaactgcaa 18200633  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18200632 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagaggaatt 18200533  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  18200532 gaatggagagaaagatgtgtggttaaccttagtcacataaaagaggagga 18200483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 12807577 - 12807663
Alignment:
Q  36 aataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 122  Q
    ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| | ||||| ||||||||||||||    
T  12807577 aataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaacc 12807663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 14458470 - 14458557
Alignment:
Q  29 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaa 116  Q
    |||||| ||| ||||||||| ||| ||||||||||||  |||||||||   ||| || ||||||||||||| | ||||| ||||||||    
T  14458470 gattacgaattaccaaaaataaaattaaacaaatgctattactcttatcttaactcctaatttgaaaattcataaactgtaaaatcaa 14458557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 855012 - 854976
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  855012 aggaggagggaaattaggaaatcatggttagggtttg 854976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 6953291 - 6953327
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953291 aggaggagggaaattaggaaatcatggttagggtttg 6953327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 6953430 - 6953466
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953430 aggaggagggaaattaggaaatcatggttagggtttg 6953466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 6953812 - 6953848
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953812 aggaggagggaaattaggaaatcatggttagggtttg 6953848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 18199388 - 18199352
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18199388 aggaggagggaaattaggaaatcatggttagggtttg 18199352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 36093873 - 36093909
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093873 aggaggagggaaattaggaaatcatggttagggtttg 36093909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 36093964 - 36094000
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093964 aggaggagggaaattaggaaatcatggttagggtttg 36094000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 36947725 - 36947761
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947725 aggaggagggaaattaggaaatcatggttagggtttg 36947761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 36947864 - 36947900
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947864 aggaggagggaaattaggaaatcatggttagggtttg 36947900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 36948003 - 36948039
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36948003 aggaggagggaaattaggaaatcatggttagggtttg 36948039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 22005963 - 22005714
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22005963 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgcaa 22005864  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005863 aatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 22005764  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  22005763 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 22005714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 7892739 - 7892490
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  7892739 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaa 7892640  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7892639 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaatt 7892540  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  7892539 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 7892490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 3598991 - 3599241
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  3598991 caattcaaaaagtcatcgaaatacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccccgaatttgaaaattcctgaactacaa 3599090  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599091 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 3599190  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggaggat 261  Q
    ||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  3599191 gaatgtaaagaaagatgtgtggttaaccttagtcacagataagaggaggat 3599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 13604170 - 13604262
Alignment:
Q  29 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 122  Q
    |||||| ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| | || || ||||||||||||||    
T  13604170 gattacgaataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcat-aaatgtaaaatcaacaaacc 13604262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 3600149 - 3600185
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  3600149 aggaggagggaaattaggaaatcatggttagggtttg 3600185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 5091003 - 5090967
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  5091003 aggaggagtgaaattaggaaatcatggttagggtttg 5090967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 7891418 - 7891382
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  7891418 aggaggagggaaattaggaaatcatggttagggtttg 7891382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 13927476 - 13927440
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13927476 aggaggagggaaattaggaaatcatggttagggtttg 13927440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 22004359 - 22004323
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004359 aggaggagggaaattaggaaatcatggttagggtttg 22004323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 22004550 - 22004514
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004550 aggaggagggaaattaggaaatcatggttagggtttg 22004514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 22004641 - 22004605
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004641 aggaggagggaaattaggaaatcatggttagggtttg 22004605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 32674255 - 32674006
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32674255 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaattgcaa 32674156  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32674155 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagttattttgtacaatagaggaatt 32674056  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  32674055 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 32674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 64 - 260
Target Start/End: Original strand, 22636691 - 22636891
Alignment:
Q  64 ctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattt 159  Q
    ||||||||||| |||||||| | |||||||||| || | ||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||    
T  22636691 ctcctactctttttccaaccaccaatttgaaaactcataaactgcaaaatcaacaaacaaaaccccacaccaatcatatgaacaacaattactttgattt 22636790  T
Q  160 tgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagg 259  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||  |||||||||||    
T  22636791 tgtaagaagcctaaaaagctattgcaagctattttgaacaaaagaggaattgaacggaaagaaagatatgcggttaaccttagtcacggagaagaggagg 22636890  T
Q  260 a 260  Q
    |    
T  22636891 a 22636891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 21122422 - 21122329
Alignment:
Q  29 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 122  Q
    |||||| ||||||||||||| ||| ||||||||||||  |||||||||   |||||| ||||| ||||||| |  || | ||||||||||||||    
T  21122422 gattacgaataaccaaaaataaaattaaacaaatgctattactcttatcttaacccctaatttaaaaattcatagaccgtaaaatcaacaaacc 21122329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 20844542 - 20844506
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  20844542 aggaggagggaaattaggaaatcatggttagggtttg 20844506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 23179576 - 23179540
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179576 aggaggagggaaattaggaaatcatggttagggtttg 23179540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 23179667 - 23179631
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179667 aggaggagggaaattaggaaatcatggttagggtttg 23179631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 32672927 - 32672891
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  32672927 aggaggagggaaattaggaaatcatggttagggtttg 32672891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 13907245 - 13906996
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13907245 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgcaa 13907146  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907145 aatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 13907046  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  13907045 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 13906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 26454890 - 26454641
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  26454890 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaa 26454791  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26454790 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaatt 26454691  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  26454690 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26454641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 40604727 - 40604478
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||    
T  40604727 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaatttctgaactgcaa 40604628  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  40604627 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagttgttgcaagctattttgtacaatagaggaatt 40604528  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  40604527 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 40604478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 32287361 - 32287325
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32287361 aggaggatggaaattaggaaatcatggttagggtttg 32287325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 13899944 - 13899908
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13899944 aggaggagggaaattaggaaatcatggttagggtttg 13899908  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 13905842 - 13905806
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13905842 aggaggagggaaattaggaaatcatggttagggtttg 13905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 26453570 - 26453534
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  26453570 aggaggagggaaattaggaaatcatggttagggtttg 26453534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 35433139 - 35433175
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  35433139 aggaggagggaaattaggaaatcatggttagggtttg 35433175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 40603405 - 40603369
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40603405 aggaggagggaaattaggaaatcatggttagggtttg 40603369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 3590584 - 3590335
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3590584 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattgctgaactgcaa 3590485  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3590484 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagaggaatt 3590385  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    |||| || ||||||||||||||||||||||||||||| | ||||||||||    
T  3590384 gaatagagagaaagatgtgtggttaaccttagtcacataaaagaggagga 3590335  T

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Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 35595691 - 35595940
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35595691 caattcaaaaagtcaacggattacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccccgaatttgaaaattcctgaactgcaa 35595790  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595791 aatcaacaaaccaaatcccacaccaatcatataacaattattttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 35595890  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  35595891 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 35595940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 2045990 - 2046239
Alignment:
Q  11 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  2045990 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaataaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaa 2046089  T
Q  111 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 210  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2046090 aataaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaatt 2046189  T
Q  211 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 260  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  2046190 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 2046239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 2051974 - 2052010
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  2051974 aggaggagggaaattaggaaatcatggttagggtttg 2052010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 39514207 - 39514243
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  39514207 aggaggagggaaattaggaaatcatggttagggtttg 39514243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 45507254 - 45507290
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507254 aggaggagggaaattaggaaatcatggttagggtttg 45507290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 45507403 - 45507439
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507403 aggaggagggaaattaggaaatcatggttagggtttg 45507439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 49791612 - 49791648
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  49791612 aggaggagggaaattaggaaatcatggttagggtttg 49791648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 41458 - 41422
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41458 aggaggatggaaattaggaaatcatggttagggtttg 41422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 41276 - 41240
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41276 aggaggagggaaattaggaaatcatggttagggtttg 41240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 41367 - 41331
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41367 aggaggagggaaattaggaaatcatggttagggtttg 41331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 36168 - 36132
Alignment:
Q  254 aggaggatagaaattaggaaatcatggttagggtttg 290  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36168 aggaggagggaaattaggaaatcatggttagggtttg 36132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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