View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11994_low_2 (Length: 464)
Name: NF11994_low_2
Description: NF11994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11994_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 112 - 457
Target Start/End: Complemental strand, 46894498 - 46894153
Alignment:
| Q |
112 |
aaaatattttgtttattgaaatgtttcaaaaagtgatttggtaagaacaatagtcaaacnnnnnnncaatatgatccttataaattcgttgagtttatta |
211 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46894498 |
aaaatattatgtttattgaaatgtttcaaaaagtgatttggtaagaacaatagtcaaacaaaaaaacaatatgatccttataaattcgttgagtttatta |
46894399 |
T |
|
| Q |
212 |
tgtttctttagattattatagtgccatataaaaaataagcttgttctggattgtaggcaacatgaatcctagaggcaatacgaatcctctaggcgatgat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894398 |
tgtttctttagattattatagtgccatataaaaaataagcttgttctggattgtaggcaacatgaatcctagaggcaatacgaatcctctaggcgatgat |
46894299 |
T |
|
| Q |
312 |
agccttctcagacagtttgagttagaagaagaggcagaatccgatttgctctgtgacattgatggatgcaaagctgggaatagtacatgtagtagcttga |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894298 |
agccttctcagacagtttgagttagaagaagaggcagaatccgatttgctctgtgacattgatggatgcaaagctgggaatagtacatgtagtagcttga |
46894199 |
T |
|
| Q |
412 |
ttttggaaaaagaacattcaccaatcatgccttgcgatctctgctg |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894198 |
ttttggaaaaagaacattcaccaatcatgccttgcgatctctgctg |
46894153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 46894669 - 46894561
Alignment:
| Q |
6 |
gtgtcggacattgacatgtgccagacatcagacaagttgagaagtgttggtgctacaagagttgttatttgtttttcttgatgtgttaatttgattctga |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46894669 |
gtgtcgtacattgacatgtgccagacatcagacaagttgagaagtgttggtgctacaaaagttgttatttgtttttcttgatctgttaatttgattctga |
46894570 |
T |
|
| Q |
106 |
aaaatgaaa |
114 |
Q |
| |
|
||||||||| |
|
|
| T |
46894569 |
aaaatgaaa |
46894561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University