View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11995_low_2 (Length: 396)
Name: NF11995_low_2
Description: NF11995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11995_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 42525650 - 42526022
Alignment:
| Q |
17 |
acttctggtataggctctccttctgcttctggcaatggagatataactttggccattctctttgttttctttgttataatgttgcagattccttgaggat |
116 |
Q |
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| T |
42525650 |
acttctggtataggctctccttctgcttctggcaatggagatataactttggccattctctttgttttctttgttataatattgcagattccttgaggat |
42525749 |
T |
|
| Q |
117 |
ccactattccctttatgaccacttcatttttagccatatcaatcaccactccctcaactcctgttaagataaacaaaaatgaaaaattagtgatcatgca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42525750 |
ccactattccctttatgaccacttcatttttagccatatcaatcaccactccctcaactcctgttaagataaacaaaaatgaaaaattagtgatcatgca |
42525849 |
T |
|
| Q |
217 |
tgacttgtgcattaattaatcaaaatcaactagataaattat-aaaaaatacctctaatttttataatatatttctcaannnnnnnggcacatcccacac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42525850 |
tgacttgtgcattaattaatcaaaatcaactagataaattataaaaaaatacctctaatttttataatatatttctcaatttttttggcacatcccacac |
42525949 |
T |
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| Q |
316 |
aatgcaagtctacaaacaacacacatggagatggtggtttaggcttttcctctagttgttcttctttcttctc |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42525950 |
aatgcaagtctacaaacaacacacatggagatggtggtttaggcttttcctctgattgttcttctttcttctc |
42526022 |
T |
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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 29280839 - 29280653
Alignment:
| Q |
17 |
acttctggtataggctctccttctgcttctggcaatggagatataactttggccattctctttgttttctttgttataatgttgcagattccttgaggat |
116 |
Q |
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|||||||| | ||| |||||||||||| ||||||||||||||||| || || |||||||||||||||| || || | ||||| || ||||||| | |
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| T |
29280839 |
acttctgggacaggttctccttctgctggaggcaatggagatataacgtttgctcttctctttgttttcttggtaattgtattgcatatagcttgaggct |
29280740 |
T |
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| Q |
117 |
ccactattccctttatgaccacttcatttttagccatatcaatcaccactccctcaactcctgtt--aagataaacaaaaatgaaaa |
201 |
Q |
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||||||| || |||||| ||||||||||||||||| ||||| || |||||||||||||||||| |||||||||| ||| ||||| |
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| T |
29280739 |
ccactataccttttatggtaacttcatttttagccatgtcaataactactccctcaactcctgttaaaagataaacataaaagaaaa |
29280653 |
T |
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