View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11995_low_5 (Length: 251)
Name: NF11995_low_5
Description: NF11995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11995_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40285245 - 40285004
Alignment:
| Q |
1 |
ctgctgtggtttctgatcatggttgggattcttcacttttcagaacaactactggatgttgaaaggtcaccattgcttgttgcaatttctggcaacgttg |
100 |
Q |
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| T |
40285245 |
ctgctgtggtttctgatcatggttgggattcttcacttttcagaacaactactggatgttgaaaggttaccattgcttgttgcaatttctggcaacgttg |
40285146 |
T |
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| Q |
101 |
tttctgaaaccccaattgagtgcgagataactggtttaagaggtgtaatagttgaagaaagagtatgtagacttcaatttctgactagcatgaattatct |
200 |
Q |
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| T |
40285145 |
tttctgaaaccccaattaagtgcgagataactggtttaagaggtgtaatagttgaagaaagagtatgtagacttcaatttctgactagcatgaattatct |
40285046 |
T |
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| Q |
201 |
cttcttttataatgatgtcgcttactcattttatccctttgc |
242 |
Q |
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| T |
40285045 |
cttcttttataatgatatcgcttactcattttatccctttgc |
40285004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 40266506 - 40266293
Alignment:
| Q |
8 |
ggtttctgatcatggttgggattcttcacttttcagaacaactactggatgttgaaaggtcaccattgcttgttgcaatttctggcaacgttgtttctga |
107 |
Q |
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| T |
40266506 |
ggtttctaatcatacttgagattct-cacgtttcagaacaattgctggatggagaaagatcacacttggttgttgcaatttctgggtgtgttgtttctga |
40266408 |
T |
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| Q |
108 |
aaccccaattgagtgcgagataactggtttaagaggtgtaatagttgaagaaagagtatgtagacttcaatttctgactagcatgaattatctcttcttt |
207 |
Q |
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| T |
40266407 |
aaccccaattaagtgcgagttgactggtttaagaggtgttgtagttgaagaaacagtatgtagacttcaatttctgact-gcattaataatctcttcttt |
40266309 |
T |
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| Q |
208 |
tataatgatgtcgctt |
223 |
Q |
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| T |
40266308 |
tacaaggatgtcgctt |
40266293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 40292518 - 40292324
Alignment:
| Q |
1 |
ctgctgtggtttctgatcatggttgggattcttcacttttcagaacaactactggatgttgaaaggtcaccattgcttgttgcaatttctggcaacgttg |
100 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||| |||| | ||| || ||||| ||||||||||| | |||| |
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| T |
40292518 |
ctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttctggcgaagttg |
40292419 |
T |
|
| Q |
101 |
tttctgaaaccccaattgagtgcgagataactggtttaagaggtgtaatagttgaagaaagagtatgtagacttcaatttctgactagcatgaat |
195 |
Q |
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| T |
40292418 |
cttttgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttcaatttctgacgagcatgaat |
40292324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 40258063 - 40257861
Alignment:
| Q |
5 |
tgtggtttctgatcatggttgggattcttcacttttcagaacaactactggatgttgaaaggtcaccattgcttgttgcaatttctggcaacgttgtttc |
104 |
Q |
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|||||||||||||||| ||||||||||| ||||||| |||||| |||||| |||| | || ||| |||||||||||||||| | || | ||| |
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| T |
40258063 |
tgtggtttctgatcatccttgggattcttgttttttcagcacaactgttggatgaagaaatatttcccttggttgttgcaatttctggaagagtgggttc |
40257964 |
T |
|
| Q |
105 |
tgaaaccccaattgagtgcgagataactggtttaagaggtgtaatagttgaagaaagagtatgtagacttcaatttctgactagcatgaattatctcttc |
204 |
Q |
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| T |
40257963 |
tgaaactccaattagctgcgagttcagtggtttaagaggtgttataattgaagaaacagtatgtatacttc-atttctgaaaagcatgaataatcgctcc |
40257865 |
T |
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| Q |
205 |
tttt |
208 |
Q |
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|||| |
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| T |
40257864 |
tttt |
40257861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 40272690 - 40272587
Alignment:
| Q |
77 |
ttgttgcaatttctggcaacgttgtttctgaaaccccaattgagtgcgagataactggtttaagaggtgtaatagttgaagaaagagtatgtagacttca |
176 |
Q |
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||||| |||||||||||| ||||||| |||| |||||||| | ||||| | | ||||||| |||||| |||||| |||||| ||||||||| |||||| |
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| T |
40272690 |
ttgttacaatttctggcagagttgtttgtgaagccccaattacgggcgagttgagtggtttaggaggtgcaatagtcgaagaacgagtatgtaaacttca |
40272591 |
T |
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| Q |
177 |
attt |
180 |
Q |
| |
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|||| |
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| T |
40272590 |
attt |
40272587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 43461339 - 43461499
Alignment:
| Q |
2 |
tgctgtggtttctgatcatggttgggattcttcacttttcagaacaactactggatgttgaaaggtcaccattgcttgttgcaatttctggcaacgttgt |
101 |
Q |
| |
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||||||||||||||| | | |||||||| ||||||||| || |||||| |||||| |||| | ||| ||| ||||| ||||||||| | | |||| |
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| T |
43461339 |
tgctgtggtttctgacgacgcttgggatttttcactttttagcacaactgttggatgcggaaaaattacccttggttgtttcaatttctgacgaagttgc |
43461438 |
T |
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| Q |
102 |
ttctgaaaccccaattgagtgcgagataactggtttaagaggtgtaatagttgaagaaaga |
162 |
Q |
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||||||||||||||| |||||||||| | | ||||||| |||||||||||||| |||||| |
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| T |
43461439 |
ttctgaaaccccaatcaagtgcgagattagtagtttaagtggtgtaatagttgacgaaaga |
43461499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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