View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11995_low_7 (Length: 239)
Name: NF11995_low_7
Description: NF11995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11995_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 38126124 - 38125954
Alignment:
| Q |
9 |
tttcatcaagaaatttacaagcctaaaacttgaaaggttaagattaaacccnnnnnnntaaaacaatatatatttaatgcaaatttgatcaatttaagaa |
108 |
Q |
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| T |
38126124 |
tttcatcaagaaatttacaagcctaaaacttgaaagatttagattaaacccaaaaaaataaaacaatatatatttaatgcaaatttgttcaatttaagaa |
38126025 |
T |
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| Q |
109 |
cctcgatgatttggctgagttcaacgttcaaaacttggttgaactgagactcactaacaccatccctacaa |
179 |
Q |
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| T |
38126024 |
cctcgatgatttggctgagttcaacgttcaacacttcgttgaactgagactcactaacaccatccctacaa |
38125954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 38117918 - 38117833
Alignment:
| Q |
93 |
ttgatcaatttaagaacctcgatgatttggctgagttcaacgttcaaaacttggttgaactgagactcactaacaccatccctaca |
178 |
Q |
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| T |
38117918 |
ttgatcactttgacaacctcaatgatttggctcagttcaatgttcaaaacttggttgaactgagactcgctgacaccatccctaca |
38117833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 14918260 - 14918159
Alignment:
| Q |
77 |
tatatttaatgcaaatttgatcaatttaagaacctcgatgatttggctgagttcaacgttcaaaacttggttgaactgagactcactaacaccatcccta |
176 |
Q |
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| T |
14918260 |
tatatttaatgcaaatttgatgaagttaagaacctcgatgatttggccgagttcgacgttcaaaacttggttgaactgagactcactaacaccatcccta |
14918161 |
T |
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| Q |
177 |
ca |
178 |
Q |
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|| |
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| T |
14918160 |
ca |
14918159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 14918540 - 14918498
Alignment:
| Q |
10 |
ttcatcaagaaatttacaagcctaaaacttgaaaggttaagat |
52 |
Q |
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| T |
14918540 |
ttcatcaagaaatttacaagcctaaaatttgaaagattaagat |
14918498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 35468742 - 35468672
Alignment:
| Q |
106 |
gaacctcgatgatttggctgagttcaacgttcaaaacttggttgaactgagactcactaacaccatcccta |
176 |
Q |
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| T |
35468742 |
gaacctcaatgatctggtcgagttcaatattcaaaacttgattgaattgtgactcactaacaccatcccta |
35468672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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