View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11997_high_5 (Length: 208)
Name: NF11997_high_5
Description: NF11997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11997_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 748685 - 748489
Alignment:
| Q |
1 |
gcactttcgtgtctgccttcgcttggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgt |
100 |
Q |
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| T |
748685 |
gcactttcgtgtctgcctttgcttggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgt |
748586 |
T |
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| Q |
101 |
cacagtttgtgtcaacatgttgttcacctttgtcattgctcaggcttttctatctatgttatgccacttcaagtttggaatcttcttgttcttctct |
197 |
Q |
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| T |
748585 |
cacagtttgtgtcaacatgttgttcacctttgtcattgctcaggcttttctatctatgttatgccacttcaagtttggaatcttcttgttcttctct |
748489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 47212629 - 47212802
Alignment:
| Q |
24 |
tggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgt |
123 |
Q |
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| T |
47212629 |
tggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgtaacagtttgtgtcaacttcctct |
47212728 |
T |
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| Q |
124 |
tcacctttgtcattgctcaggcttttctatctatgttatgccacttcaagtttggaatcttcttgttcttctct |
197 |
Q |
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| T |
47212729 |
tcactgctgtcattgcacaagctttcctttcaatgctttgctatttcaagtttggtatcttctttttcttctct |
47212802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 47186001 - 47186174
Alignment:
| Q |
24 |
tggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgt |
123 |
Q |
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| T |
47186001 |
tggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgt |
47186100 |
T |
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| Q |
124 |
tcacctttgtcattgctcaggcttttctatctatgttatgccacttcaagtttggaatcttcttgttcttctct |
197 |
Q |
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| T |
47186101 |
tcacttttcttattgctcaagctttcttgtccatgttgtgccaccttaagtttggaattttcttgtttttctct |
47186174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 47198540 - 47198664
Alignment:
| Q |
24 |
tggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgt |
123 |
Q |
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| T |
47198540 |
tggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgt |
47198639 |
T |
|
| Q |
124 |
tcacctttgtcattgctcaggcttt |
148 |
Q |
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|||| ||| | |||||||| ||||| |
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| T |
47198640 |
tcacttttcttattgctcaagcttt |
47198664 |
T |
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