View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11997_low_1 (Length: 502)
Name: NF11997_low_1
Description: NF11997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11997_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 39422970 - 39423427
Alignment:
| Q |
19 |
gttataatccgtccaaccgaacttttgttgaatgggcatatgaagaaggcccatacacactgatggaacatc---catggatgtatagggcaagcaactt |
115 |
Q |
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| T |
39422970 |
gttataatccgtccaaccaaacttttgttgaatgggcatatgaagaaggcccatacacactgatggaacatcatccatggatgtatagggaaagcaactt |
39423069 |
T |
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| Q |
116 |
cagcatttagttcgggtcgcatgttagccaaaccctacatatcctcccattagggtgctattacattattacagtatgtatttcaagcgcatttctcgtt |
215 |
Q |
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| T |
39423070 |
cagcatttagttcgggttgcatgttagccaaaccctacatatcctcccattagggtgctattacattattacagtatgtatttcaagcgcatttctcgtt |
39423169 |
T |
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| Q |
216 |
cttatgttgttttcaatacctttcaatttcaattataaatgaaggaaaatgttgcggttgaatggatcatatttctgttnnnnnnnggtagtatcgtaac |
315 |
Q |
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| T |
39423170 |
cttatgttgttttcaatacctttcaatttcaatta--aatgaaggaaaatgtcccggttgaatggatcatatttctgttaaaaaagggtagtatcgtaac |
39423267 |
T |
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| Q |
316 |
ttatggaatttgcgattattgtcccctatgtataaagtggtaaaggcaagttgtgagcttgaaacagattgtaagatgattgtggatgccaagggatgca |
415 |
Q |
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| T |
39423268 |
ttatggaatttgcgattattttcccctatgtataaagtggtaaaggcaagttgtgagcttgaaacagattgtaagttgattgtggatgccaagggatgca |
39423367 |
T |
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| Q |
416 |
cttcggctctaagtgattttggagtgaaaataattaattttgataaagttggtattgaat |
475 |
Q |
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| T |
39423368 |
cttcggctctaagtgattttggagtgaaaataattaattttgataaagttggtattgaat |
39423427 |
T |
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