View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11997_low_2 (Length: 410)
Name: NF11997_low_2
Description: NF11997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11997_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 401
Target Start/End: Original strand, 42307303 - 42307697
Alignment:
| Q |
7 |
gtatagcatgcaaggaataaaactcaagaacaaatgtttcactctacctcggtaaattgtagtaaatgaagagccaatgtacactcatctttatgatcga |
106 |
Q |
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| T |
42307303 |
gtatagcatgcaaggaataaaactcaagaacaaatgtttcactctacctcggtaaattgtagtaaatgaagagccaatgtacactcatctttatgatcga |
42307402 |
T |
|
| Q |
107 |
gcaccaaactcccattctgtcacaagttggtaaacaagatatgaagcatgtaaatttgcaccagttataaacacaaatgcagtattgaatcatatcacaa |
206 |
Q |
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| T |
42307403 |
gcaccaaactcccattctgtcacaagttggtaaacaagatatgaagcatgtaaatttgcaccagttataaacacaaatgcagtattgaatcatatcacaa |
42307502 |
T |
|
| Q |
207 |
tcacaatagatgactgcttaactgactaatatttaaccatgatatactctagtataaaacctatacacaattcatatatatgtttaacattgtaaaatta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307503 |
tcacaatagatgactgcttaactgactaatatttaaccatgatatactctagtataaaacctatacacaattcatatatatgtttaacattgtaaaatta |
42307602 |
T |
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| Q |
307 |
agcatatgatgcaaaaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaacttaccttttttagttcttct |
401 |
Q |
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| T |
42307603 |
tgcatatgatgcaaaaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaacttaccttttttagttcttct |
42307697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 51571028 - 51570874
Alignment:
| Q |
6 |
agtatagcatgcaaggaataaaactcaagaacaaatgtttcactctacctcggtaaattgtagtaaatgaagagccaatgtacactcatctttatgatcg |
105 |
Q |
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| T |
51571028 |
agtataacatgcaatgaacaaatctcatgaaaaaatgtttcactttacctcagtaaattgtagtaaatgaagacccaatgtacgctcgtcttcatgctcc |
51570929 |
T |
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| Q |
106 |
agcaccaaactcccattctgtcacaagttggtaaacaagatatgaagcatgtaaa |
160 |
Q |
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| T |
51570928 |
aacaccaaattaccattctgtcacgagttggtaaacaagatatgaagcatataaa |
51570874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 401
Target Start/End: Complemental strand, 51570711 - 51570631
Alignment:
| Q |
318 |
caaaaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaacttaccttttttagttcttct |
401 |
Q |
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| T |
51570711 |
caaaaagcaattaaattaacttttccaataattctaatgtcatca-ca--gaaattagaaaagcttaccttttttagttcttct |
51570631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 297
Target Start/End: Original strand, 47972050 - 47972293
Alignment:
| Q |
51 |
tacctcggtaaattgtagtaaatgaagagccaatgtacactcatctttatgatcgagcaccaaactcccattctgtcacaagttggtaaacaagatatga |
150 |
Q |
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|||||| |||||||| |||||||||||| ||||||||| |||||||| ||| || | ||||||| ||||| |||||||| | |||||||||||||||||| |
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| T |
47972050 |
tacctcagtaaattgaagtaaatgaagacccaatgtacgctcatcttcatgctccaacaccaaattcccagtctgtcacgaattggtaaacaagatatga |
47972149 |
T |
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| Q |
151 |
agcatgtaaatttgcaccagttataaacacaaatgcagtattgaatcatatcacaatcacaatagatgactgcttaactgactaat--atttaaccatga |
248 |
Q |
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| T |
47972150 |
agcttaatattatacaaaag-tataaacacaaatgaattaatgagtcatattacaatcataatatatgagtgcttaattgactcatcaagtcaaccatga |
47972248 |
T |
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| Q |
249 |
tatactctagtataaaacctatacacaattcatatatatgtttaacatt |
297 |
Q |
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| T |
47972249 |
tctactc----ataaaacctaggcataatacatgtatatgtttaacatt |
47972293 |
T |
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