View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11997_low_3 (Length: 395)
Name: NF11997_low_3
Description: NF11997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11997_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 6525180 - 6525545
Alignment:
| Q |
17 |
accaccgcttcctccgttccgacgaagctttcgattcttcaaaaaactctctaattcttcatcttcaatcatctcacgcgaacacagtctccaatttcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6525180 |
accaccgcttcctccgttccgacgaagctttcgattcttcaacaaactctctaattcttcatcttcaatcatctcacgcgaacacagtctccaatttcat |
6525279 |
T |
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| Q |
117 |
ctcaattttcatactcgttgttcaaacgaaactattttatcattattttcgattttgattcttgtttttatatattcttactcgattaacgttaaatttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6525280 |
ctcaattttcatactcgttgttcaaacgaaactattttatcattattttcgattttgattcttgtttttatatattcttactcgattaacgttaaatttt |
6525379 |
T |
|
| Q |
217 |
gttagagaagtgtttttaggttgaaatgtcgattgacggaagcttcacccttcatttggcgcttcggagattgcttgatcgttgtccaaagcttcaatcg |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6525380 |
gttagaaaagtgtttttaggttgaaatgtcgattgacggaagcttcacccttcatttggcgcttcggagattgcttgatcgttgtccaaagcttcaatca |
6525479 |
T |
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| Q |
317 |
tttcctcagattgaggcgttagctcagaaggcatggcttcaatctttaattcctctttttacattc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6525480 |
tttcctcagattgaggcgttagctcagaaggcatggcttcaatctttaattcctctttttacattc |
6525545 |
T |
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