View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11998_high_5 (Length: 279)
Name: NF11998_high_5
Description: NF11998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11998_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 43 - 266
Target Start/End: Original strand, 34060009 - 34060232
Alignment:
| Q |
43 |
acttcgataaaatcaaccaatcatcacagaaaacagttgattcaattcagagattgagagttaagtttcaaggcaattttgatctgtactcaattgtatt |
142 |
Q |
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| T |
34060009 |
acttcgataaaatcaaccaatcatcacagaaaacagttgattcaattcagagattgagagttaagtttcaaggcaattttgatctgtactcaattgtatt |
34060108 |
T |
|
| Q |
143 |
catagttgatacaagatcatcagtatcggttagtaaactcgctcatcacatcagaaaaaagtgcaaaataattctccaaagagtacgacaactttatcaa |
242 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34060109 |
catagttgatgcaagatcatcagtatcagttagtaaactcgctcatcacatcagaaaaaagtgcaaaataattctccaaagagtacgacaactttatcaa |
34060208 |
T |
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| Q |
243 |
ctttgcaatgatcttacacaggtt |
266 |
Q |
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|||||||||||||||||||||||| |
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| T |
34060209 |
ctttgcaatgatcttacacaggtt |
34060232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 256
Target Start/End: Complemental strand, 22232261 - 22232039
Alignment:
| Q |
43 |
acttcgataaaatcaaccaatcatcacagaa---------aacagttgattcaattcagagattgagagttaagtttcaaggcaattttgatctgtactc |
133 |
Q |
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|||||||||||||||||||||||||||| || ||| || |||||||||||||||||||||| |||||||||||| || ||||| | ||| |
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| T |
22232261 |
acttcgataaaatcaaccaatcatcacaaaatctgcagcaaacggtagattcaattcagagattgagagacaagtttcaaggctatgttgatttctacca |
22232162 |
T |
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| Q |
134 |
aattgtattcatagttgatacaagatcatcagtatcggttagtaaactcgctcatcacatcagaaaaaagtgcaaaataattctccaaagagtacgacaa |
233 |
Q |
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|| |||||||| ||||| |||||||||||| ||| ||| |||||||| ||||||||||| |||| | |||||||| | |||| |||||||||| || | |
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| T |
22232161 |
aactgtattcacggttgacgcaagatcatcagcatcagttggtaaactcactcatcacatccgaaagacgtgcaaaacagttctgcaaagagtaccacga |
22232062 |
T |
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| Q |
234 |
ctttatcaactttgcaatgatct |
256 |
Q |
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|||||||||||||||| ||||| |
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| T |
22232061 |
gtttatcaactttgcaacgatct |
22232039 |
T |
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