View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11998_high_6 (Length: 230)
Name: NF11998_high_6
Description: NF11998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11998_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 46680491 - 46680712
Alignment:
| Q |
1 |
ttgaaggcatgcgcgcatctttgac---gaaagtttgagacacagtcaacatcatatatccatgccatactctgcaatgcaatctaaaaactcctataaa |
97 |
Q |
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| T |
46680491 |
ttgaaggcacgcgcgcatctttgactgagacagtttgagacacagtcaacatcatatatccatgccatactctccaatgcaatctaaaaactcctataaa |
46680590 |
T |
|
| Q |
98 |
tacaattttatagtacaatgc-----aatctaacaaaccaactaaatcctactaccttgctttcataaatatttctatttctgcaacaaattaatattca |
192 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46680591 |
tacaattttatagtagaatgcaatctaatctaacaaaccaactaaatcctactaccttgctttcataaatatttctatttctgcaacaaattaatattca |
46680690 |
T |
|
| Q |
193 |
t--aaactttcagctttaattc |
212 |
Q |
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| T |
46680691 |
taaaaactttcagctttaattc |
46680712 |
T |
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