View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11998_low_1 (Length: 498)

Name: NF11998_low_1
Description: NF11998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11998_low_1
NF11998_low_1
[»] chr1 (8 HSPs)
chr1 (6-498)||(47758958-47759450)
chr1 (201-498)||(47712060-47712357)
chr1 (223-498)||(47716811-47717087)
chr1 (223-410)||(47744694-47744883)
chr1 (6-150)||(47744989-47745124)
chr1 (392-498)||(47744575-47744678)
chr1 (6-151)||(47717196-47717334)
chr1 (288-384)||(47774281-47774377)
[»] chr5 (2 HSPs)
chr5 (287-385)||(28855463-28855561)
chr5 (287-384)||(27369442-27369539)


Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 6 - 498
Target Start/End: Complemental strand, 47759450 - 47758958
Alignment:
Q  6 ataaatctcgaaggtgtgtgactttgtctaaattcagtagactgtctaaatcgtggtatgaactcaggataattttgagttttgacgatttaaaatctac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47759450 ataaatctcgaaggtgtgtgactttgtctaaattcagtagactgtctaaatcgtggtatgaactcaggataattttgagttttgacgatttaaaatctac 47759351  T
Q  106 ttcataatattaagttgtaatggttaacaaagttttgcattcaaatnnnnnnnnctagatgtagtaattcaaaaatagagagaaaatggaagccaatatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  47759350 ttcataatattaagttgtaatggttaacaaagttttgcattcaaataaaaaaaactagatgtagtaattcaaaaatagagagaaaatggaagccaatatt 47759251  T
Q  206 tttctatttttactttactaacatgccttgtatcatttttgaagaaatcgaagaagacgacaatgatgatattgacatggctgagtcattgcaattcaac 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47759250 tttctatttttactttactaacatgccttgtatcatttttgaagaaatcgaagaagacgacaatgatgatattgacatggctgagtcattgcaattcaac 47759151  T
Q  306 tttgagacattacaagttgctacaagtaacttttctgaagctaataaacttggacatggaggatttggagttgtttatcacgtaagtaatactattgatt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47759150 tttgagacattacaagttgctacaagtaacttttctgaagctaataaacttggacatggaggatttggagttgtttatcacgtaagtaatactattgatt 47759051  T
Q  406 tagatgaacatcacattcttcatctttaacattcttgttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47759050 tagatgaacatcacattcttcatctttaacattcttgttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgc 47758958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 201 - 498
Target Start/End: Complemental strand, 47712357 - 47712060
Alignment:
Q  201 atatttttctatttttactttactaacatgccttgtatcatttttgaagaaatcgaagaagacgacaatgatgatattgacatggctgagtcattgcaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | || |||||||||||||| || ||||||||||| | ||    
T  47712357 atatttttctatttttactttactaacatgccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctat 47712258  T
Q  301 tcaactttgagacattacaagttgctacaagtaacttttctgaagctaataaacttggacatggaggatttggagttgtttatcacgtaagtaatactat 400  Q
    ||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  47712257 tcaacttcgagacattacgagttgctacagggaacttttctgaagctaataaacttggacatggcggatttggagttgtttatcaggtaagtaatactat 47712158  T
Q  401 tgatttagatgaacatcacattcttcatctttaacattcttgttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgc 498  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712157 tgatttagatgaacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgc 47712060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 223 - 498
Target Start/End: Complemental strand, 47717087 - 47716811
Alignment:
Q  223 ctaacatgccttgtatcatt-tttgaagaaatcgaagaagacgacaatgatgatattgacatggctgagtcattgcaattcaactttgagacattacaag 321  Q
    ||||||||||||||| |||| |||||||| ||   |||||| || ||| |||||||||| || ||||||||||||| ||||||||| |||||||||| ||    
T  47717087 ctaacatgccttgta-cattgtttgaagatat---agaagatgataataatgatattgaaatcgctgagtcattgctattcaacttcgagacattacgag 47716992  T
Q  322 ttgctacaagtaacttttctgaagctaataaacttggacatggaggatttggagttgtttatcacg----taagtaatactattgatttagatgaacatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |    ||  ||||||||||||||||||||||||||    
T  47716991 ttgctacaagtaacttttctgaagctaataaacttggacatggcggatttggaattgtttatcaggtatatatataatactattgatttagatgaacatc 47716892  T
Q  418 acattcttcatctttaacattcttgttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgc 498  Q
    |||||||||||| ||||  | ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||    
T  47716891 acattcttcatcattaaagtacttattatacacaaatgaaatatatttacagggtatactcgccggtggacaagtgattgc 47716811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 223 - 410
Target Start/End: Complemental strand, 47744883 - 47744694
Alignment:
Q  223 ctaacatgccttgtatcatttttgaagaaatcgaagaagacgacaatgatgatattgacatggctgagtcattgcaattcaactttgagacattacaagt 322  Q
    |||||||||||||||  || |||||||| ||  ||||||| || ||| |||||||||| ||  ||| |||||||| ||||||||| |||||||||| |||    
T  47744883 ctaacatgccttgtacaatgtttgaagatataaaagaagatgaaaataatgatattgaaatcactgcgtcattgctattcaacttcgagacattacgagt 47744784  T
Q  323 tgctacaagtaacttttctgaagctaataaacttggacatggaggatttggagttgtttatcacg--taagtaatactattgatttagat 410  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |  ||| |||||||||||||||||||    
T  47744783 tgctacaagtaacttttctgaagataataaacttggacatggcggatttggagttgtttatcaggtataaataatactattgatttagat 47744694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 47745124 - 47744989
Alignment:
Q  6 ataaatctcgaaggtgtgtgactttgtctaaattcagtagactgtctaaatcgtggtatgaactcaggataattttgagttttgacgatttaaaatctac 105  Q
    ||||||||| |||||  ||||||||||||||||||  ||  |||||||| ||||||||||||  ||||||||||||||       |||  ||||||||||    
T  47745124 ataaatctccaaggtacgtgactttgtctaaattcgtta--ctgtctaagtcgtggtatgaatgcaggataattttga-------cgacataaaatctac 47745034  T
Q  106 ttcataatattaagttgtaatggttaacaaagttttgcattcaaa 150  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  47745033 ttcataataataagttgtgatggttaacaaagttttgcattcaaa 47744989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 392 - 498
Target Start/End: Complemental strand, 47744678 - 47744575
Alignment:
Q  392 taatactattgatttagatgaacatcacattcttcatctttaacattcttgttatacacaaatgaaatatatttgcagggtatacttgccggtggacaag 491  Q
    |||||||  ||||||| ||||||||||| |||||||||   || || ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  47744678 taatactgatgatttacatgaacatcactttcttcatc---aaaatacttattatacagaaatgaaatatatttgcagggtatactcgccggtggacaag 47744582  T
Q  492 tcattgc 498  Q
    | |||||    
T  47744581 tgattgc 47744575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 47717334 - 47717196
Alignment:
Q  6 ataaatctcgaaggtgtgtgactttgtctaaattcagtagactgtctaaatcgtggtatgaactcaggataattttgagttttgacgatttaaaatctac 105  Q
    ||||||||||||||| |||||| ||  |||||||   |||||||||||| |||||||||| |  ||||||||||||||       |||  |||||| |||    
T  47717334 ataaatctcgaaggtatgtgacctttcctaaatttgttagactgtctaagtcgtggtatggatgcaggataattttga-------cgacataaaatttac 47717242  T
Q  106 ttcataatattaagttgtaatggttaacaaagttttgcattcaaat 151  Q
    ||||||||| |||||||| |||||||||| ||||||||||||||||    
T  47717241 ttcataataataagttgtgatggttaacagagttttgcattcaaat 47717196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 47774281 - 47774377
Alignment:
Q  288 gagtcattgcaattcaactttgagacattacaagttgctacaagtaacttttctgaagctaataaacttggacatggaggatttggagttgtttatc 384  Q
    ||||| |||||||| |||||||| ||  ||| ||||||||||||| |||| || ||  |||||||||||||||| || || || |||||||||||||    
T  47774281 gagtctttgcaatttaactttgataccatacgagttgctacaagtgacttctccgattctaataaacttggacaaggtgggttcggagttgtttatc 47774377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 385
Target Start/End: Complemental strand, 28855561 - 28855463
Alignment:
Q  287 tgagtcattgcaattcaactttgagacattacaagttgctacaagtaacttttctgaagctaataaacttggacatggaggatttggagttgtttatca 385  Q
    ||||||||| |||||||||||||| ||  || |||||||||||| | |||| |||||  |||||||||||||  | || |||||||||| |||||||||    
T  28855561 tgagtcattacaattcaactttgacactgtaaaagttgctacaaatgacttctctgattctaataaacttggcgaaggcggatttggagctgtttatca 28855463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 384
Target Start/End: Complemental strand, 27369539 - 27369442
Alignment:
Q  287 tgagtcattgcaattcaactttgagacattacaagttgctacaagtaacttttctgaagctaataaacttggacatggaggatttggagttgtttatc 384  Q
    ||||||||||||||| |||||||| |   ||||||||||||| ||| | || ||| |  |||||||||||||||| || ||||||||| |||||||||    
T  27369539 tgagtcattgcaatttaactttgatatcatacaagttgctacgagtgatttctctaattctaataaacttggacaaggtggatttggaattgtttatc 27369442  T

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