View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11998_low_2 (Length: 409)
Name: NF11998_low_2
Description: NF11998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11998_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 2853467 - 2853104
Alignment:
| Q |
18 |
taaatatgattttagtctccacaaatatattatcttatgttgttagtctctgttaacatttgtttgtatactaattaaggtgtgactctctcaacaaccc |
117 |
Q |
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||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
2853467 |
taaatatgattttagtctccaca--tatattattttatgttattagtctctgttaacatttgtttgcatactaattaagatgtgactctctcaacaaccc |
2853370 |
T |
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| Q |
118 |
aaatgccaaatgatggcaataatgatgcgttgttgaataaaaagagcatatagtttgaatcaattttcagggatgaaattagcaagaccaagctcactcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853369 |
aaatgccaaatgatggcaataatgatgcgttgttgaataaaaagagcatatagtttgaatcaattttcagggatgaaattagcaagaccaagctcactcg |
2853270 |
T |
|
| Q |
218 |
caaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaacagtgattctttcgttcannnnnnnnnnnnnnnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2853269 |
caaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaaaagtgattctttcgttcattttaagcttttttact |
2853170 |
T |
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| Q |
318 |
nnnnnnnngcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853169 |
gattttttgcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgc |
2853104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 2905497 - 2905134
Alignment:
| Q |
18 |
taaatatgattttagtctccacaaatatattatcttatgttgttagtctctgttaacatttgtttgtatactaattaaggtgtgactctctcaacaaccc |
117 |
Q |
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||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
2905497 |
taaatatgattttagtctccaca--tatattattttatgttattagtctctgttaacatttgtttgcatactaattaagatgtgactctctcaacaaccc |
2905400 |
T |
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| Q |
118 |
aaatgccaaatgatggcaataatgatgcgttgttgaataaaaagagcatatagtttgaatcaattttcagggatgaaattagcaagaccaagctcactcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2905399 |
aaatgccaaatgatggcaataatgatgcgttgttgaataaaaagagcatatagtttgaatcaattttcagggatgaaattagcaagaccaagctcactcg |
2905300 |
T |
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| Q |
218 |
caaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaacagtgattctttcgttcannnnnnnnnnnnnnnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2905299 |
caaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaaaagtgattctttcgttcattttaagcttttttact |
2905200 |
T |
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| Q |
318 |
nnnnnnnngcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2905199 |
gattttttgcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgc |
2905134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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